BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3473.p         (373 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0225 [M] COG0859 ADP-heptose Vch Vibrio cholerae                     51   4e-06
CC1051 Non COG                                                         49   2e-05
STM3723 [M] COG0859 ADP-heptose Sty Salmonella typhimurium LT2         44   8e-04
rfaQ [M] COG0859 ADP-heptose Eco Escherichia coli K12                  43   0.001
YPO0057 [M] COG0859 ADP-heptose Ype Yersinia pestis                    43   0.001

>VC0225 [M] COG0859 ADP-heptose Vch Vibrio cholerae
          Length = 357

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 204 DIPAQWQHYAQDQLAAW---QFAPRAGKLVFINPYAKTKKRCWPLEHVAALIAAMQARDG 260
           DI  +W    Q     W   QF P   +LV + P A    + W  E  AA+I   Q + G
Sbjct: 154 DIEPKWSLTCQPDDLTWAEAQFQPEQPRLVVV-PGASKAYKNWTAEGYAAVIEHAQ-QQG 211

Query: 261 WQDACFIVNAVPQELANAREVIGRYGLQRTQL-FSAEENFFQLPAMLACCDLIISVETAV 319
           WQ    I+   P ++           L    L    +    Q+ A+LA  DL+I+ +T  
Sbjct: 212 WQ---VILAGSPAQVERDLAAQVEQALAHPVLNLVGKSTLQQMLALLAKADLVIAPDTGP 268

Query: 320 MHLANAVQVPVIALMRQKNPE 340
            H+ANA+  P+I L    NPE
Sbjct: 269 AHMANAMHTPIIGLYAHHNPE 289


>CC1051 Non COG
          Length = 323

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 128/357 (35%), Gaps = 55/357 (15%)

Query: 24  KILFIAHLALGDFTYLQNFFRGFAAQHPRMKIHLWVDEVRRTADASQWPHLKKYSLYDWT 83
           K+L I   ALGDF       R     HP+ KI L             +  L K S     
Sbjct: 7   KVLVIKLGALGDFVLALAAMRKIREAHPKAKITLLT--------TPPFEALAKLS----- 53

Query: 84  AACPFFAKVYTQTYSPELYR--ASIAEARREHYPIVVSLAT-LRPHLYAGLAREISPE-- 138
              P+F  V T     +  +  A I   R+  Y  V  L T  R + Y  + R   P+  
Sbjct: 54  ---PYFNSVETDGRPDDFGQTLAMIGRIRKARYDRVYDLQTNSRTNGYFQMLRPFPPQWN 110

Query: 139 GWVVGMKKSVKLFQPHHLLAYRKLDAAMPPYHSATPEHHISDVYAHWFRQLSGL---EVS 195
           G  VG                     ++P   SA    H  +  A   R  +G+     +
Sbjct: 111 GIAVG--------------------CSLPQKGSARLTMHTLERQADQLRA-AGIWPDAPT 149

Query: 196 GQARFPFVDIPAQWQHYAQDQLAAWQFAPRAGKLVFINPYAKTKKRCWPLEHVAALIAAM 255
                P  D+    + + + +  A   APR   L      A   ++ WP+E  A L + +
Sbjct: 150 EPGSAPPPDLSWILRKHKEPRPVAGAAAPRPYVLFVPGGSAHRLEKRWPVECYAQLGSLL 209

Query: 256 QARDGWQDACFIVNAVPQELANAREVIGRYGLQRTQLFSAEENFFQLPAMLACCDLIISV 315
           +A+        ++   PQE A AR +    G  R    +   +F QL  + A   L +  
Sbjct: 210 KAKG----LDIVIIGGPQESAMARHIQKAVGGARD--LTGRTDFAQLAVLGARAALTVGN 263

Query: 316 ETAVMHLANAVQVPVIALMRQKNPEWVPVDRAHSTVITAPGRRDWVKAVSVEQVMKA 372
           +T   HL  A   P IAL    +   +   R H  VI +P     +KA+ V  V  A
Sbjct: 264 DTGPTHLLAAAGAPTIALFSDASDPELCGPRGHVAVIRSPD----LKALPVSTVASA 316


>STM3723 [M] COG0859 ADP-heptose Sty Salmonella typhimurium LT2
          Length = 344

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 230 VFINPYAKTKKRCWPLEHVAALIAAMQARDGWQDACFIVNAVPQELANAREVIGRYGLQR 289
           V I P A+   +CW  +  + +I A+Q R G+Q           E+A    +      + 
Sbjct: 174 VVIQPTARQLFKCWDNDKFSQVIDAVQRR-GYQ-VVLTSGPAADEMACVDAIARGCETKP 231

Query: 290 TQLFSAEENFFQLPAMLACCDLIISVETAVMHLANAVQVPVIAL 333
               + +  F +L A++   DL I V++A  H+A AV+ PVI L
Sbjct: 232 VTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICL 275


>rfaQ [M] COG0859 ADP-heptose Eco Escherichia coli K12
          Length = 344

 Score = 43.1 bits (100), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%)

Query: 230 VFINPYAKTKKRCWPLEHVAALIAAMQARDGWQDACFIVNAVPQELANAREVIGRYGLQR 289
           V I P A+   +CW  +  + +I A+Q R G+Q           +LA   E+      + 
Sbjct: 174 VVIQPTARQIFKCWDNDKFSKVIDALQQR-GYQ-VVLTCGPSADDLACVDEIARGCETKP 231

Query: 290 TQLFSAEENFFQLPAMLACCDLIISVETAVMHLANAVQVPVIAL 333
               + +  F +L A++    L I V++A  H+A AV+ PVI+L
Sbjct: 232 ITGLAGKTRFPELGALIDHAVLFIGVDSAPGHIAAAVKTPVISL 275


>YPO0057 [M] COG0859 ADP-heptose Ype Yersinia pestis
          Length = 354

 Score = 42.7 bits (99), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 243 WPLEHVAALIAAMQARDGWQDACFIVNAVPQELANAREVIGRYGLQRTQLFSAEENFFQL 302
           WP  H A L A     DG+Q   F      +   + R+ +     +     + + +  Q 
Sbjct: 197 WPHYHYATL-AQKLIDDGYQVILFGSAKDNEAGEDIRQALSDTDREYCLNLAGQTSLEQA 255

Query: 303 PAMLACCDLIISVETAVMHLANAVQVPVIALMRQKNPEWVPVDRAHSTVI 352
             ++A C  ++S ++ +MH+A A+  P++AL    +P++ P     +TVI
Sbjct: 256 VVLIAACSAVVSNDSGLMHVAAALNKPLVALYGPSSPDFTPPLSEKATVI 305