BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3453.p         (518 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3702 [T] COG3706 Response regulator containing a CheY-like rec...   176   1e-43
RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum                  172   2e-42
sll1673_3 [T] COG2199 FOG Syn Synechocystis                           170   9e-42
slr0829_3 [T] COG2199 FOG Syn Synechocystis                           158   3e-38
slr1047_3 [T] COG2199 FOG Syn Synechocystis                           157   4e-38

>PA3702 [T] COG3706 Response regulator containing a CheY-like receiver
           domain and a GGDEF domain Pae Pseudomonas aeruginosa
          Length = 347

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/181 (50%), Positives = 121/181 (66%), Gaps = 2/181 (1%)

Query: 335 ELHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYND 394
           +L + N  L+ L + DGLTGL+NRRH D  L  EWRR+LR  + LSL+MIDVD+FK YND
Sbjct: 159 QLLETNLVLQRLMNSDGLTGLSNRRHFDEYLEMEWRRSLREQSQLSLLMIDVDYFKSYND 218

Query: 395 LYGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGI 454
            +GH AGDE LR++A  ++E   R  DLAARYGGEE  M+LP T   GA  +AEK+R  +
Sbjct: 219 TFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPGTSPGGARLLAEKVRRTV 278

Query: 455 QALDLPH-RGNPAGVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKHGGRNQVRLA 513
           ++L + H +  P   +T+S GV  L + G G +T   L+  AD ALYQAK+ GRNQV L 
Sbjct: 279 ESLQISHDQPRPGSHLTVSIGVSTL-VPGGGGQTFRVLIEMADQALYQAKNNGRNQVGLM 337

Query: 514 Q 514
           +
Sbjct: 338 E 338


>RSp1524_2 [T] COG2199 FOG Rso Ralstonia solanacearum
          Length = 190

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 113/173 (65%)

Query: 338 QANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYNDLYG 397
           +A Q+L  LA+ DGLTGL  RR LD  L AEW+RA R    L+++MIDVD FK YND YG
Sbjct: 6   EAEQKLAWLANTDGLTGLGTRRALDAALEAEWQRANRQGRPLAVLMIDVDEFKHYNDRYG 65

Query: 398 HQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGIQAL 457
           H AGD  LR +A  + +  RRPGD A RYGGEE  +LLPDTD AGA +VAE IRA + A 
Sbjct: 66  HAAGDTVLRTVARCVNDSIRRPGDFAGRYGGEEFCVLLPDTDLAGAQRVAEIIRATVLAA 125

Query: 458 DLPHRGNPAGVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKHGGRNQV 510
             P+ G+  G +T+S GV A +  G    T   LL  AD+ LY+AK GGRN V
Sbjct: 126 GEPNAGSAHGRLTVSIGVAAHDGRGDTGTTPARLLHHADLQLYEAKSGGRNAV 178


>sll1673_3 [T] COG2199 FOG Syn Synechocystis
          Length = 176

 Score =  170 bits (430), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 87/175 (49%), Positives = 119/175 (68%), Gaps = 3/175 (1%)

Query: 336 LHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYNDL 395
           L  ANQQL+LLA+ DGLT +ANRR  D  LA EW+R  R    LSLI++D+D+FK YNDL
Sbjct: 1   LQAANQQLQLLANIDGLTHIANRRRFDEYLAQEWQRHCREQKPLSLILVDIDYFKAYNDL 60

Query: 396 YGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGIQ 455
           YGHQ GD+CL+++A  L +  +R  DL ARYGGEE V++LP+T+   A+ +AE +   I 
Sbjct: 61  YGHQKGDDCLQKVANTLVDIAKRITDLVARYGGEEFVIVLPNTNRQDALAMAENMLQAIA 120

Query: 456 ALDLPHRGNP-AGVVTISAGVGALELLGPGARTLEDLLGQADIALYQAKHGGRNQ 509
           AL +PH G+  +  VTIS GV +  ++     T+E ++ +AD ALY AK  GRN+
Sbjct: 121 ALAIPHEGSSVSKYVTISIGVSS--IIPMPEDTIERIISEADQALYSAKSQGRNR 173


>slr0829_3 [T] COG2199 FOG Syn Synechocystis
          Length = 188

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/179 (48%), Positives = 113/179 (63%), Gaps = 11/179 (6%)

Query: 336 LHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYNDL 395
           L + N++L  L   DGLT +ANRR  +  +  EWRR  R+   +SLIM D+D FK YND 
Sbjct: 1   LERFNKKLSQLIDIDGLTKIANRRCFNVRIKQEWRRLSRAQVPISLIMFDIDCFKNYNDR 60

Query: 396 YGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGIQ 455
           YGH  GD CL R+A   ++   RP DL AR+GGEE  +LLP+TD  GA+ VAEKI   I 
Sbjct: 61  YGHPEGDLCLIRVAQAARKAASRPADLVARFGGEEFAVLLPETDTKGAIMVAEKIIQAIS 120

Query: 456 ALDLPHRGNP-AGVVTISAGVG----ALELLGPGARTLEDLLGQADIALYQAKHGGRNQ 509
            L + H  +P +G +TIS G+G    + EL+   +RT   L+ QAD+ALY+AK  GRNQ
Sbjct: 121 QLAIAHEASPISGQITISLGIGTQFPSKELI---SRT---LIKQADMALYEAKRRGRNQ 173


>slr1047_3 [T] COG2199 FOG Syn Synechocystis
          Length = 184

 Score =  157 bits (398), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/179 (45%), Positives = 113/179 (63%), Gaps = 5/179 (2%)

Query: 336 LHQANQQLELLAHQDGLTGLANRRHLDTVLAAEWRRALRSNAVLSLIMIDVDFFKQYNDL 395
           L Q NQ+L+ LA  D LT + NRR+  + L  EWR+ LR  + +SLI+ DVD+FK YNDL
Sbjct: 1   LEQVNQRLKHLAIYDELTQIPNRRYFTSYLEQEWRQCLRQKSPISLILCDVDYFKNYNDL 60

Query: 396 YGHQAGDECLRRIAAVLKERQRRPGDLAARYGGEEMVMLLPDTDAAGAMQVAEKIRAGIQ 455
           YGHQ GD+CL+ +A V++   +RP D+ ARYGGEE +++LP TD +GA  V ++I   + 
Sbjct: 61  YGHQMGDKCLQSVAKVIQNALKRPSDVLARYGGEEFIVILPYTDQSGAYTVGQRIHHCLA 120

Query: 456 ALDLPHRGNPAG-VVTISAGVG-ALELLGPGARTLEDLLGQADIALYQAKHGGRNQVRL 512
              + H  +P    +TIS G+G  + LL        DL+  AD ALY AK  GRNQ +L
Sbjct: 121 EAQISHADSPTSRYLTISLGIGTTVPLLHYHP---SDLIKIADQALYAAKAAGRNQTKL 176