BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3450.p (266 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2902 [ET] COG0834 ABC-type amino acid transport/signal transdu... 97 3e-20 PA5270 [ET] COG0834 ABC-type amino acid transport/signal transdu... 80 5e-15 FN0800 [ET] COG0834 ABC-type amino acid transport/signal transdu... 52 2e-06 VCA0978 [ET] COG0834 ABC-type amino acid transport/signal transd... 52 2e-06 SP0112 [ET] COG0834 ABC-type amino acid transport/signal transdu... 47 3e-05 >PA2902 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 282 Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 110/243 (45%), Gaps = 8/243 (3%) Query: 5 LPAIMLVAMTMP-LPVAAADCAKVIISADSDYAPLHW---YDGKRLTGASIEIATRALTA 60 L I+L A+ +P L AA C +++ + + +Y P W D KRL GA+ ++ R Sbjct: 10 LAGILLAALFVPGLAAAAGSCERLVATGNPEYPPYLWRDPQDPKRLIGANADLLQRLGKE 69 Query: 61 LKIPYEVRYVGPFHRVLKEAESGEVSMVASLKNTPERQQYLAFTAVPLFRNPIAIFVARD 120 L + +V Y G + + +E SG ++A T R + + P ++V +D Sbjct: 70 LGVRIDVLYSGSWEKAQEEVTSGRADLLAGAYLTLARLGSMDYMHPPFLMTSGVVWVNKD 129 Query: 121 KAFAYAGWKDLVGKRGAITLGNQFGGGFDEFMRDHLSIETAQKVYMNFTKLDSGRIDYLL 180 AF + G DL+G +G++ G+ G FD F + L ++ + L R ++LL Sbjct: 130 AAFPFIGRDDLIGHKGSVLAGSSLGEEFDRFAKASLDLKPVPSLTQGLQDLMLKRSEFLL 189 Query: 181 TGYYSGMIYLNQTGQSERFMALRPFVSETDNYIAMSKASPCVKYLPRLNAQLELMQKRGE 240 G + G ++ AL P +S Y+ +S S C P L Q L +K E Sbjct: 190 YQALPGQAQVEALGMADDLEALEPVLSSEGLYLTLSHNSACND--PWLRGQ--LAKKMTE 245 Query: 241 LRA 243 L A Sbjct: 246 LSA 248 >PA5270 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Pae Pseudomonas aeruginosa Length = 293 Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 12/250 (4%) Query: 3 KLLPAIMLVAMTMPLPVAAADCAKVIISADSDYAPLHWYDGKRLTGASIEIATRALTALK 62 LP +L+A++ P AA +++ A+ D+ P Y R+ G S +I A A Sbjct: 44 HFLPICLLLALSGP--AAAVPTEPLVLGAEDDWYPYTAYKDGRIQGMSADIVRAAFRAAD 101 Query: 63 IPYEVRYVGPFHRVLKEAESGEVSMVASLKNTPERQQYLA---FTAVPLFRNPIAIFVAR 119 P ++ P+ R +K A G ++A NT LA PLFR I ++ R Sbjct: 102 TPVQLNPY-PYSRCMKLALKG---LIAGCFNTSPNPHILADYRLPRHPLFRAEIQLWARR 157 Query: 120 DKAFAYAGWKDLVGKRGAITLGNQFGGGFDEFMRDHLSIETAQKVYMNFTKLDSGRIDYL 179 D+A + L G++ A+TLG ++G GFD R L +K Y F L GR+DY Sbjct: 158 DEARPVNAEQALSGRKVAVTLGYEYGDGFDR--RHDLVRIPVRKDYYGFLMLQRGRVDYA 215 Query: 180 LTGYYSGMIYLNQTGQSERFMALRPFVSETDNYIAMSKASPCVKY-LPRLNAQLELMQKR 238 L + ++ + E V + Y++ S+ P ++ L R + ++ + Sbjct: 216 LAYRNTARQLFSEHPELEGQFQPVATVHRPELYLSFSRRHPQAEHLLERFDLGMQRILAS 275 Query: 239 GELRAVLQSF 248 GE + +L + Sbjct: 276 GEYQKILDGW 285 >FN0800 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Fnu Fusobacterium nucleatum Length = 230 Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 11/223 (4%) Query: 27 VIISADSDYAPLHWYDGKRLTGASIEIATRALTALKIPYEVRYVGPFHRVLKEAESGEVS 86 V + ++++AP + D ++ G I++ + ++++ + F +L ++ +V Sbjct: 16 VYVGTNAEFAPFEYLDKNKIVGFDIDLLDAISKETGLEFKIQDMA-FDGLLPALQTKKVD 74 Query: 87 MV-ASLKNTPERQQYLAFTAVPLFRNPIAIFVARDKAFAYAGWKDLVGKRGAITLGNQFG 145 MV A + TPERQ+ +AF+ P F+ + + + + + +KDL GK+ + LG F Sbjct: 75 MVIAGMTATPERQKTVAFSK-PYFKAK-QVVITKGENKSLKSFKDLSGKKVGVMLG--FT 130 Query: 146 GGFDEFMRDHLSIETAQKVYMNFTKLDSGRIDYLLTGYYSGMIYLNQTGQSERFMALRPF 205 G + IE Y L +ID ++ Y T +++F+ Sbjct: 131 GDTVVSEIKGVKIERFNAAYAAILALSQNKIDAVVLDSEPAKKY---TANNKQFVIANIP 187 Query: 206 VSETDNYIAMSKASPCVKYLPRLNAQLELMQKRGELRAVLQSF 248 E D IA K + + ++N L+ ++ GE +L+ + Sbjct: 188 AEEEDYAIAFRKNDK--ELINKVNVALDKIKANGEYDKILKKY 228 >VCA0978 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Vch Vibrio cholerae Length = 243 Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 10/224 (4%) Query: 29 ISADSDYAPLHWYDGKRLTGASIEIATRALTALKIPYEVRY-VGPFHRVLKEAESGEVSM 87 I+A D P + + G S++I T A Y V + + P+ R L + + G++ + Sbjct: 23 ITAAQDPWPPFVMENAQQKGLSVDIVTAAFATQG--YTVEFTIMPWSRALNDVKEGKIDI 80 Query: 88 VASLKNTPERQQYLAFTAVPLFRNPIAIFVARDKAFAYAGWKDLVGKRGAITLGNQFGGG 147 + + T ER YL ++ L N + F +AG L GK+ I G +G Sbjct: 81 LPATWFTQERTAYLTYSDNYL-TNQVKFIKKAGDNFEFAGLASLNGKKVGIVRGYGYG-- 137 Query: 148 FDEFMRD-HLSIETAQKVYMNFTKLDSGRIDYLLTGYYSGMIYLNQTGQS-ERFMALRPF 205 DEFM D + + N KL +GRID + + + G + F Sbjct: 138 -DEFMNDPSFFRPESTDLKQNLQKLQAGRIDLAVEDELVAKSIITEAGMNLADFAFTNQA 196 Query: 206 VSETDNYIAMSKASP-CVKYLPRLNAQLELMQKRGELRAVLQSF 248 +SE ++ KA+P + + N L ++ G +L + Sbjct: 197 ISENPLHVTSGKANPRSEELVAAFNKGLAEIKANGTFDKLLADY 240 >SP0112 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Spn Streptococcus pneumoniae TIGR4 Length = 268 Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 20/232 (8%) Query: 25 AKVIISADSDYAPLHW---YDGK-RLTGASIEIATRALTALKIPYEVRYVGPFHRVLKEA 80 K++++ + D+AP + DGK ++ G+ IE+A T L + E+ + F VL Sbjct: 38 GKLVVALNPDFAPFEYQKVVDGKNQIVGSDIELAKAIATKLGVELELSPMS-FDNVLASV 96 Query: 81 ESGEVSM-VASLKNTPERQQYLAFTAVPLFRNPIAIFVARDKAFAYAGWKDLVGKRGAIT 139 +SG+ + ++ + T ER + F+ +P + + V + Y DL K+ Sbjct: 97 QSGKADLAISGVSKTDERSKVFDFS-IPYYTAKNKLIVKKSDLTTYQSVNDLAQKK---- 151 Query: 140 LGNQFGGGFDEFMRDHLSIETAQKVYMN---FTKLDSGRIDYLL--TGYYSGMIYLNQTG 194 +G Q G + +D L + + N T L SG++D ++ G + N Sbjct: 152 VGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVSKGFVENN--- 208 Query: 195 QSERFMALRPFVSETDNYIAMSKASPCVKYLPRLNAQLELMQKRGELRAVLQ 246 + +A F E D+ A++ K ++ ++ +++ GEL +++ Sbjct: 209 -PDLAIADLNFEKEQDDSYAVAMKKDSKKLKEAVDKTIQKLKESGELDKLIE 259