BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3443.p (542 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 371 e-102 RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 358 3e-98 RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 348 2e-95 RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 339 1e-92 RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 335 2e-91 >RSc1155 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 629 Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/310 (65%), Positives = 259/310 (83%) Query: 210 RGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQTKLGDTTSLLFAIKQMRDSLVAIVGKVRE 269 RGL + LGG+PAYAA++A +IA GDL+ ++ T+ D SLL+A+ +MR +LV +G++R Sbjct: 216 RGLQRALGGDPAYAAEVANRIAGGDLSVEIATRPDDRDSLLYAMGRMRGALVQTIGRIRG 275 Query: 270 GTHTIEQASAEIASGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVS 329 + TI A+ EIASGN+DLSSRTEQQA +LEETASAMEELMSTV+QNADNA QA+QLAVS Sbjct: 276 ASETIGTATREIASGNLDLSSRTEQQASSLEETASAMEELMSTVQQNADNANQANQLAVS 335 Query: 330 ASEVASQGGEVVGKVVTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQ 389 AS+VA +GG+VV +VV TM IN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 336 ASDVAVRGGDVVSRVVETMGSINASSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQ 395 Query: 390 GRGFAVVASEVRNLAQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRV 449 GRGFAVVA EVR+LAQRSA AAKEI LI+DSV ++ GS+LVE+AG TM +V+SV+RV Sbjct: 396 GRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSVTNVDAGSALVEEAGTTMREIVASVRRV 455 Query: 450 TDVVAEISYASQEQSNGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLV 509 TD+V EI+ ASQEQ +GI +++ ++T +D+ATQQNAALVE+AAAAA ++ EQA +L+ +V Sbjct: 456 TDIVGEITAASQEQRSGIEEVSHAVTQLDDATQQNAALVEQAAAAAQSLQEQADSLTQVV 515 Query: 510 STFQLEASVT 519 + F+L+ +++ Sbjct: 516 AQFRLDPTMS 525 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 358 bits (918), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 203/394 (51%), Positives = 282/394 (71%), Gaps = 11/394 (2%) Query: 139 MEEYRDFLVNECSPLRRQIVLDINKVIDEVSAENDKARQTTNDMASRASIIVAVLTIIVA 198 ++E R + S L+ + + ++K++D + E + + A I + VL ++ Sbjct: 141 VQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEAAAQGANAKIQMIVLAVLAT 200 Query: 199 IISVLIAFVITRGLLKQLGGEPAYAAQIAQQIAAGDLTS----DVQTKLGDTTSLLFAIK 254 ++++ ITR + + + +A +A+ +A G+LT D Q ++G LL A+K Sbjct: 201 LLAIATGAFITRTITRPIN----HAMHLAEAVAQGNLTHLLEVDTQDEIG---RLLAALK 253 Query: 255 QMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALEETASAMEELMSTVK 314 M ++L IV +VR GT TI +AS+E+ASGN+DLSSRTEQQA +LEETA+AME+L STVK Sbjct: 254 HMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEETAAAMEQLTSTVK 313 Query: 315 QNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVDIISVIDGIAFQTNI 374 QNADNA++AS+LA +AS VA++GG+ V + + TM INTSSRKIVDII VIDGIAFQTNI Sbjct: 314 QNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDIIGVIDGIAFQTNI 373 Query: 375 LALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLINDSVAQIEQGSSLVEQ 434 LALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEI LI DSV + G++ VE+ Sbjct: 374 LALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDSVGHVSTGTAKVEE 433 Query: 435 AGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEATQQNAALVEEAAAA 494 AGQ + +VV+ ++ VT++V+EIS +S+EQS+GI QIN +IT MD+ATQ+NA+LVEE+A A Sbjct: 434 AGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATA 493 Query: 495 ANAMTEQASALSGLVSTFQLEASVTPSITMAVGE 528 A A+ +QA+ L+ +VSTF+L A ++ A GE Sbjct: 494 AQALQDQANQLADMVSTFKLHADLSGRGRAAQGE 527 >RSc2799 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 348 bits (893), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 199/328 (60%), Positives = 256/328 (78%), Gaps = 1/328 (0%) Query: 187 SIIVAVLTIIVAIISVLIA-FVITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQTKLGD 245 S+I ++ I+V +V +A F+I R + + LGGEPAYA +IA++IA GDL VQT+ D Sbjct: 186 SLIANLIAILVVGGAVTLAMFLIIRNVQRGLGGEPAYATEIARRIADGDLAVRVQTRPDD 245 Query: 246 TTSLLFAIKQMRDSLVAIVGKVREGTHTIEQASAEIASGNMDLSSRTEQQAGALEETASA 305 S+LFA+ +M+ L +G ++ +I A+ +IA+GN DLS RTE+QA +LEETAS+ Sbjct: 246 RNSMLFAMARMQQQLTGTIGHIKTSADSIASATQQIATGNADLSQRTEEQASSLEETASS 305 Query: 306 MEELMSTVKQNADNAKQASQLAVSASEVASQGGEVVGKVVTTMEGINTSSRKIVDIISVI 365 MEEL S VKQNADNA+QAS LAV+AS++A +GGEVVG+VV TM GIN SS+KI DII VI Sbjct: 306 MEELTSIVKQNADNARQASTLAVNASDIAVKGGEVVGRVVDTMAGINDSSKKIADIIGVI 365 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAKEITGLINDSVAQI 425 +GIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEI LI+DSV ++ Sbjct: 366 EGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKVLISDSVGRV 425 Query: 426 EQGSSLVEQAGQTMENVVSSVKRVTDVVAEISYASQEQSNGISQINVSITHMDEATQQNA 485 E G++LV +AG ++ VV +VKRVTD++ EIS AS EQS+GI Q+N ++ MDE TQQNA Sbjct: 426 ENGTTLVAEAGTVIDEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNA 485 Query: 486 ALVEEAAAAANAMTEQASALSGLVSTFQ 513 ALVEEAAAAA ++ EQA+ L V++F+ Sbjct: 486 ALVEEAAAAALSLEEQATLLRDAVASFR 513 >RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 339 bits (869), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/298 (61%), Positives = 231/298 (77%) Query: 217 GGEPAYAAQIAQQIAAGDLTSDVQTKLGDTTSLLFAIKQMRDSLVAIVGKVREGTHTIEQ 276 GGEP+ AAQ +A GDL+ + D TSLL +K+M+ SL IV VR ++ Sbjct: 216 GGEPSVAAQAVSAMAQGDLSRVIAVDADDRTSLLAKLKEMQASLSGIVATVRNNAESVAT 275 Query: 277 ASAEIASGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLAVSASEVASQ 336 ASA+IA GN DLS RTEQQA AL+ET++ M+EL STV NA+NA+QA+QLA AS VA++ Sbjct: 276 ASAQIAQGNQDLSHRTEQQASALQETSATMDELGSTVGNNAENARQANQLASGASSVAAE 335 Query: 337 GGEVVGKVVTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 396 GGEVV +VV M+GIN S+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 336 GGEVVSQVVGMMKGINDGSKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 395 Query: 397 ASEVRNLAQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVKRVTDVVAEI 456 A+EVR+LAQRSA AAKEI LI SV Q+EQG++LV++AG TME +V +++RV+++VAEI Sbjct: 396 AAEVRSLAQRSAAAAKEIKALITSSVEQVEQGTTLVDRAGATMEQIVGAIQRVSNIVAEI 455 Query: 457 SYASQEQSNGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSGLVSTFQL 514 S AS EQS+G+SQ+ +++ MDEATQQNAALVE++AAAA+++ QA L V+ F+L Sbjct: 456 SSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQAVAVFKL 513 >RSp1099 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 335 bits (859), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 196/307 (63%), Positives = 241/307 (78%) Query: 208 ITRGLLKQLGGEPAYAAQIAQQIAAGDLTSDVQTKLGDTTSLLFAIKQMRDSLVAIVGKV 267 + RGL +QLGG+PAYAA IA +IAAGDL V+T+ GD S+LFA+ QM+ L + + Sbjct: 207 LARGLQRQLGGDPAYAADIAARIAAGDLAMRVETRPGDRDSVLFAMAQMQRELTGTISHI 266 Query: 268 REGTHTIEQASAEIASGNMDLSSRTEQQAGALEETASAMEELMSTVKQNADNAKQASQLA 327 + +I A+ +IA+GN DLS RTEQQA +LEETAS+MEEL S VKQNADNA+QAS LA Sbjct: 267 KHSADSIASATQQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQASTLA 326 Query: 328 VSASEVASQGGEVVGKVVTTMEGINTSSRKIVDIISVIDGIAFQTNILALNAAVEAARAG 387 V+AS+VA +GGEVVG+VV TM GIN SS+KI DII VI+GIAFQTNILALNAAVEAARAG Sbjct: 327 VNASDVAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNAAVEAARAG 386 Query: 388 EQGRGFAVVASEVRNLAQRSATAAKEITGLINDSVAQIEQGSSLVEQAGQTMENVVSSVK 447 EQGRGFAVVA EVR+LAQRSA AAKEI LI DSV ++ G++LVE+AG ++ VV +VK Sbjct: 387 EQGRGFAVVAGEVRSLAQRSAGAAKEIKELIGDSVGRVRNGTALVEEAGAVIDEVVVAVK 446 Query: 448 RVTDVVAEISYASQEQSNGISQINVSITHMDEATQQNAALVEEAAAAANAMTEQASALSG 507 RVTD++ EIS AS EQS+GI Q+N ++ MD+ TQQNAALVE+AAAAA ++ EQA L Sbjct: 447 RVTDIMGEISAASAEQSSGIEQVNQAVNQMDQVTQQNAALVEQAAAAALSLEEQAQVLRT 506 Query: 508 LVSTFQL 514 V FQ+ Sbjct: 507 AVGRFQM 513