BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3440.p         (82 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3308 Non COG                                                        48   4e-06
YBR283c [U] COG0201 Preprotein translocase subunit SecY Sce Sacc...    31   0.66 
SSO2881 [C] COG1032 Fe-S oxidoreductase Sso Sulfolobus solfataricus    27   8.2  
BMEI0229 [R] COG1512 Beta-propeller domains of methanol dehydrog...    27   9.6  

>AGc3308 Non COG
          Length = 38

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 26/34 (76%)

Query: 1  MIDWVPIVFVTFKLLVFITGMFFAIKWHYDQGKK 34
          M D+ PIVF+ FKLLV   GMFFAIKWH+DQ K 
Sbjct: 4  MWDFFPIVFLPFKLLVLGIGMFFAIKWHHDQAKN 37


>YBR283c [U] COG0201 Preprotein translocase subunit SecY Sce Saccharomyces
           cerevisiae
          Length = 490

 Score = 31.2 bits (69), Expect = 0.66,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 6   PIVFVTFKLLVFITGMFFAIKWHYDQGK---------KDKGKQMMDTR 44
           P+ F+T+   + +TG++FA KW    G          KD+G  +M  R
Sbjct: 364 PLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRR 411


>SSO2881 [C] COG1032 Fe-S oxidoreductase Sso Sulfolobus solfataricus
          Length = 502

 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 9   FVTFKLLVFITGMFFAIKWHYDQGKKDKGKQMMDTRAV-LRTS-GLVALVFLLLLLGL 64
           F+   +   I  +F  I+W++++ K+ KGK  ++ R + L T+ G+V  +F LL L  
Sbjct: 438 FIRSIVTYMIDKVFKTIEWYFERLKETKGKSALEYRELNLNTTYGVVWSLFQLLRLAF 495


>BMEI0229 [R] COG1512 Beta-propeller domains of methanol dehydrogenase type
           Bme Brucella melitensis
          Length = 253

 Score = 27.3 bits (59), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 2   IDWVPIVFVTFKLLVFITGMFFAI 25
           +DWV +VF+ F  L+F  G   AI
Sbjct: 175 VDWVFVVFIAFWCLIFFGGFGMAI 198