BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3429.p         (108 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR2560 [R] COG3668 Plasmid stabilization system protein Dra Dein...    75   2e-14
PA4877 [R] COG3668 Plasmid stabilization system protein Pae Pseu...    35   0.031
RSp0958 [D] COG2846 Regulator of cell morphogenesis and NO signa...    32   0.32 
mll7347 Non COG                                                        31   0.69 
NMA1656 [L] COG2812 DNA polymerase III, gamma/tau subunits NmA N...    30   1.2  

>DR2560 [R] COG3668 Plasmid stabilization system protein Dra Deinococcus
           radiodurans
          Length = 96

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/109 (45%), Positives = 60/109 (55%), Gaps = 15/109 (13%)

Query: 1   MPQTAWSNKRERQYEHIKSSAVKRGTGTRRAEEIAARTVNKERAQHGESKSASKTSTEDM 60
           MP+ AWSNK ERQYEH+K S VKRG    RAEEIAARTVNK R + G             
Sbjct: 1   MPK-AWSNKDERQYEHVKDSEVKRGESPDRAEEIAARTVNKSRREEGR------------ 47

Query: 61  SPSRR--GGLRSHTGAGGRTYKQLYAEAAARHIKGRSGMRKAELEKELA 107
           +P++R  G           T  +LY  A  + I GRS M KAEL + L+
Sbjct: 48  TPNKRTQGTGNPDAALSDLTRDELYNRAKEKGIAGRSRMSKAELVRALS 96


>PA4877 [R] COG3668 Plasmid stabilization system protein Pae Pseudomonas
           aeruginosa
          Length = 135

 Score = 35.4 bits (80), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 26/134 (19%)

Query: 1   MP---QTAWSNKRERQYEHIKSSAVKRGTGTRRAEEIAARTVNKERAQH--------GES 49
           MP   ++ +S+K++R+ EHI+ S   +G     AE  A  TVNK+             +S
Sbjct: 1   MPRGDKSKYSDKQQRKAEHIEESYKAKGVSESEAEARAWATVNKQSGGGERKGGSGRAKS 60

Query: 50  KSASKTSTEDMS----------PSRRGGL-----RSHTGAGGRTYKQLYAEAAARHIKGR 94
           ++A +   +D +          P+ RG       +  T     T ++L   A  R I+GR
Sbjct: 61  ETAKRADRKDSAHRAAQARSGRPANRGSASRGKRQGSTSVSEMTREELMQLARKRDIRGR 120

Query: 95  SGMRKAELEKELAK 108
           S MRKAEL + L++
Sbjct: 121 STMRKAELIEALSR 134


>RSp0958 [D] COG2846 Regulator of cell morphogenesis and NO signaling Rso
           Ralstonia solanacearum
          Length = 223

 Score = 32.0 bits (71), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 15  EHIKSSAVKRGTGTRRAEEIAARTVNKERAQHGESKSASKTSTEDMSPSRRGGLRSHTGA 74
           E I    + RG G R    IA   +  E  QHGE+     T T D++P R         A
Sbjct: 137 EQILFPMLARGHGLRAGGPIA--VMRMEHDQHGEALQRLMTLTNDITPPR---------A 185

Query: 75  GGRTYKQLY 83
              T++ LY
Sbjct: 186 ACTTWRALY 194


>mll7347 Non COG
          Length = 680

 Score = 30.8 bits (68), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 12  RQYEHIKSSAVKRGTGTRRAEEIAART--------VNKERAQHGESKSASKTSTEDMSPS 63
           R + H K+ A+ R T +  A      T        +NK  A HG    A K  + D+ P 
Sbjct: 325 RCFHHDKAQALPRATPSDVATAPKPTTAPVLRVAGLNKTYASHGHPLRAVKDVSLDLRPG 384

Query: 64  RRGGLRSHTGAGGRTYKQL 82
              GL   +G+G  T+ +L
Sbjct: 385 ETLGLVGESGSGKTTFARL 403


>NMA1656 [L] COG2812 DNA polymerase III, gamma/tau subunits NmA Neisseria
          meningitidis Z2491
          Length = 709

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 24 RGTGTRRAEEIAARTVNKERAQHGESKSASKTSTE 58
          RG G      I A+++N E AQHGE     ++ T+
Sbjct: 47 RGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81