BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3423.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1235 Non COG                                                       163   1e-40
NMB2021 [CO] COG2924 Fe-S cluster protector protein Nme Neisseri...   147   4e-36
NMA0419 [CO] COG2924 Fe-S cluster protector protein NmA Neisseri...   147   4e-36
HI0760 [CO] COG2924 Fe-S cluster protector protein Hin Haemophil...   103   7e-23
PM1320 [CO] COG2924 Fe-S cluster protector protein Pmu Pasteurel...    99   2e-21

>RSc1235 Non COG
          Length = 91

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 73/90 (81%), Positives = 82/90 (91%)

Query: 1  MARMVHCIKLNKEAEGLDFPPYPGELGKRIYESVSKEAWAAWLKHQTMLVNENRLMLADA 60
          MARMVHC+KLNKEAEGLDFPP PGELGK+I++SVSKEAWA WLKHQTML+NENRL +AD 
Sbjct: 1  MARMVHCVKLNKEAEGLDFPPLPGELGKKIWQSVSKEAWAGWLKHQTMLINENRLNMADT 60

Query: 61 RARKYLAAQMEKHFFGEGADAAAGYVPPPS 90
          RAR+YL  Q EK+FFGEGAD A+GYVPPPS
Sbjct: 61 RARQYLLKQTEKYFFGEGADQASGYVPPPS 90


>NMB2021 [CO] COG2924 Fe-S cluster protector protein Nme Neisseria
          meningitidis MC58
          Length = 88

 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 77/87 (88%)

Query: 1  MARMVHCIKLNKEAEGLDFPPYPGELGKRIYESVSKEAWAAWLKHQTMLVNENRLMLADA 60
          MARMV C+KLNKEAEG+ FPP P ELGKRI+E+VS+EAWAAW +HQTML+NENRL LAD 
Sbjct: 1  MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTRHQTMLINENRLSLADP 60

Query: 61 RARKYLAAQMEKHFFGEGADAAAGYVP 87
          RAR+YLA QME++FFG+GADA  GYVP
Sbjct: 61 RAREYLAQQMEQYFFGDGADAVQGYVP 87


>NMA0419 [CO] COG2924 Fe-S cluster protector protein NmA Neisseria
          meningitidis Z2491
          Length = 88

 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 77/87 (88%)

Query: 1  MARMVHCIKLNKEAEGLDFPPYPGELGKRIYESVSKEAWAAWLKHQTMLVNENRLMLADA 60
          MARMV C+KLNKEAEG+ FPP P ELGKRI+E+VS+EAWAAW +HQTML+NENRL LAD 
Sbjct: 1  MARMVFCVKLNKEAEGMKFPPLPNELGKRIFENVSQEAWAAWTRHQTMLINENRLSLADP 60

Query: 61 RARKYLAAQMEKHFFGEGADAAAGYVP 87
          RAR+YLA QME++FFG+GADA  GYVP
Sbjct: 61 RAREYLAQQMEQYFFGDGADAVQGYVP 87


>HI0760 [CO] COG2924 Fe-S cluster protector protein Hin Haemophilus
          influenzae
          Length = 90

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 62/91 (68%), Gaps = 2/91 (2%)

Query: 1  MARMVHCIKLNKEAEGLDFPPYPGELGKRIYESVSKEAWAAWLKHQTMLVNENRLMLADA 60
          MAR V C  L KEAEGLDF  YPGELGKRI++SVSK+AW  W+K QTMLVNE +L + +A
Sbjct: 1  MARTVFCEYLKKEAEGLDFQLYPGELGKRIFDSVSKQAWGEWIKKQTMLVNEKKLNMMNA 60

Query: 61 RARKYLAAQMEKHFFGEGADA-AAGYVPPPS 90
            RK L  +M    F EG D    GYVPP +
Sbjct: 61 EHRKLLEQEMVNFLF-EGKDVHIEGYVPPSN 90


>PM1320 [CO] COG2924 Fe-S cluster protector protein Pmu Pasteurella
          multocida
          Length = 90

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 62/89 (69%), Gaps = 2/89 (2%)

Query: 1  MARMVHCIKLNKEAEGLDFPPYPGELGKRIYESVSKEAWAAWLKHQTMLVNENRLMLADA 60
          MAR V C  L +E+EGLDF  YPGELGKRI++S+SK+AW  W+K QTMLVNE +L + +A
Sbjct: 1  MARTVFCEYLKQESEGLDFQLYPGELGKRIFDSISKQAWREWMKKQTMLVNEKKLNMMNA 60

Query: 61 RARKYLAAQMEKHFFGEGADA-AAGYVPP 88
            R+ L  +M  +F  EG D    GYVPP
Sbjct: 61 DHRQLLEQEM-VNFLFEGKDVHIEGYVPP 88