BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3402.p (496 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2391 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 335 1e-91 PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 216 8e-56 PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aerug... 209 1e-53 AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tu... 207 4e-53 RSc0166 [MU] COG1538 Outer membrane protein Rso Ralstonia solana... 196 1e-49 >PA2391 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 474 Score = 335 bits (859), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 198/420 (47%), Positives = 289/420 (68%), Gaps = 14/420 (3%) Query: 78 WWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREMP 137 WWK FG+ EL L+Q N+ ++ AA +RV+QAQA A IAGAPLLP + + GA+R+ Sbjct: 51 WWKAFGAPELDSLLQRALLNSQDLGAAVARVRQAQASAVIAGAPLLPELNATLGASRQKL 110 Query: 138 I--SG--GTPTNTAN-------ASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVAL 186 + SG GT + N A L SYE+DFWG +A +A +L+A+ YD+ TV L Sbjct: 111 LRDSGYSGTDATSDNDAVDSFSAGLSASYEVDFWGGRQAAYRSALESLKASEYDRATVEL 170 Query: 187 TVTSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALAN 246 T+ SG+ ++YLQVL+LR++ IAR N++NAE VLRLVE + AG+A+ L++A+Q S +A+ Sbjct: 171 TLLSGVANSYLQVLALREQQRIARLNLDNAEHVLRLVETRHAAGSATALEVAQQSSLVAS 230 Query: 247 QRQLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRISAGLPSELLTRRPDI 306 QR+ +P L+QQ +A LA L+G P Q +V E+ ++ P AGLPSELL+RRPDI Sbjct: 231 QRKQLPLLEQQAHEALITLATLIGEPVQALQVAERPFDSLRWPETGAGLPSELLSRRPDI 290 Query: 307 RRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIF 366 AEA LAAA A+V VARAALFP ++L+ S + ++ F P + +LGA+L+APIF Sbjct: 291 ANAEAQLAAAQADVQVARAALFPKLTLSASLSSGANRAADTFRNP--YYNLGANLLAPIF 348 Query: 367 DGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARF 426 + G LR ++ + A++EEL++ YR+ ++T+ ++ E++L +I L+ + + E++QA+ Sbjct: 349 NHGRLRAERDRSLARQEELLETYRKAILTAFADTERSLNSIDGLDRQLHWQQQELEQAQR 408 Query: 427 AFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ-DKQ 485 AF+L++ RY+AGAE LL VL+TQRTL AQ+ Q++L RLQA+V LYKALGGGWQ D+Q Sbjct: 409 AFDLSDSRYQAGAETLLTVLETQRTLYAAQDAAVQLRLARLQASVGLYKALGGGWQSDRQ 468 >PA2837 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 479 Score = 216 bits (551), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 152/425 (35%), Positives = 235/425 (55%), Gaps = 18/425 (4%) Query: 78 WWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREMP 137 WW F ++L+ L+Q QR N ++ +A +R++Q++A R G LP+V S R+ Sbjct: 55 WWTLFDDAQLNALLQRVQRANLDLRSAAARLQQSRAIRRSLGGDALPSVDASGNYQRQRT 114 Query: 138 ISGG--TPT--------NTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALT 187 S G P+ N A A S+E+DFWG+ R +EAA+AT+ A+ + + V ++ Sbjct: 115 TSAGLFDPSGKAGKGNYNHALAGFDASWELDFWGRVRRELEAADATVEASENELRDVQVS 174 Query: 188 VTSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQ 247 V + Y+Q+ ++R I R N+ A R L L + G A+ L++A+ + +A+ Sbjct: 175 VLAEAARDYIQLRGEQNRAAIIRDNLETARRSLELTRTRLANGVATDLEVAQALAQVASM 234 Query: 248 RQLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPR----ISAGLPSELLTRR 303 +P++++ + AL L+G P + + E G A+ +PR + GLPSEL RR Sbjct: 235 EARLPEVEKNQAHLVNALGYLVGASPGSL-LAELGPARA-IPRPPGSVPVGLPSELAQRR 292 Query: 304 PDIRRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIA 363 PDIRRAEA L AA A++ VA+A +P I+L G+ G +S L SL D + ++G + Sbjct: 293 PDIRRAEARLHAATASIGVAKADFYPRITLNGNFGFESLQLSSLGDWDHRQFAIGPAFSL 352 Query: 364 PIFDGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGE-VD 422 PIF+GG LR + L EAQ++E Y++ V+ + EV+ A+ + +R + ++GE V Sbjct: 353 PIFEGGRLRGRLELREAQQQEAAIDYQRTVLRAWQEVDDAMHDY-AANQRRQERLGEAVA 411 Query: 423 QARFAFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQ 482 Q R A + A +YRAGA D L VLD+QR L + Q Q V+LYKALGGGW Sbjct: 412 QNRRALQSAREQYRAGAVDFLSVLDSQRQLLDNQEQQVASDEAVSLTLVNLYKALGGGWS 471 Query: 483 DKQVP 487 P Sbjct: 472 PTSDP 476 >PA2525 [MU] COG1538 Outer membrane protein Pae Pseudomonas aeruginosa Length = 498 Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/427 (31%), Positives = 225/427 (52%), Gaps = 20/427 (4%) Query: 78 WWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREMP 137 WW+ +G L++L +R+N +A + ++ +QA+A R A A P++ + G TR Sbjct: 56 WWELYGDQTLNDLQMHLERSNQTLAQSVAQFRQAEALVRGARAAFFPSITGNVGKTRSGQ 115 Query: 138 ISGGTP-----------------TNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYD 180 G + + + + +L VS+E+D WGK R +EA +A+L A+ D Sbjct: 116 GGGDSTVLLPGGSTVSSGGSGAISTSYSTNLSVSWEVDLWGKLRRQLEANQASLHASAAD 175 Query: 181 QQTVALTVTSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQ 240 V L+ S + YLQ+ + +++ + V ER L++ E + RAG + D+A+ Sbjct: 176 LAAVRLSQQSQLAQNYLQLRVMDEQIRLLNDTVTAYERSLKVAENKYRAGIVTRADVAQA 235 Query: 241 RSALANQRQLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKI-QMPRISAGLPSEL 299 R+ L + + DL+ Q + A+A+L+G PP F + +A + ++P + A +PS+L Sbjct: 236 RTQLKSTQAQAIDLKYQRAQLEHAIAVLVGLPPAQFNLPP--VASVPKLPDLPAVVPSQL 293 Query: 300 LTRRPDIRRAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGA 359 L RRPDI AE + +ANA + VA+AA FP ++L+ + G +S +L + PN F S+G Sbjct: 294 LERRPDIASAERKVISANAQIGVAKAAYFPDLTLSAAGGYRSGSLSNWISTPNRFWSIGP 353 Query: 360 SLIAPIFDGGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVG 419 +FDGG + +Q AEA ++ V YRQ V+ EVE L + L+E ++ Sbjct: 354 QFAMTLFDGGLIGSQVDQAEATYDQTVATYRQTVLDGFREVEDYLVQLSVLDEESGVQRE 413 Query: 420 EVDQARFAFELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGG 479 ++ AR A LAE +Y+AG D V+ Q T + + + RL A+V L A+GG Sbjct: 414 ALESAREALRLAENQYKAGTVDYTDVVTNQATALSNERTVLTLLGSRLTASVQLIAAMGG 473 Query: 480 GWQDKQV 486 GW + Sbjct: 474 GWDSADI 480 >AGc4622 [MU] COG1538 Outer membrane protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 513 Score = 207 bits (528), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 156/482 (32%), Positives = 242/482 (50%), Gaps = 20/482 (4%) Query: 25 RLTLAVTLVLTVAGCVTREVQTDPILEMQVPDKW---GGGASADVAHAEQLWPDTDWWKQ 81 R TL +T++L ++GCV P E+Q+P K+ G ++ D++ WW Sbjct: 34 RATLPLTMLL-LSGCVVGPDHQTP--EIQLPGKFAEAGKTSNGDISTVA-------WWNA 83 Query: 82 FGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNV-----GLSAGATREM 136 F S L+ V G N + A R+ QAQ+ +AGA LP++ + G+ + Sbjct: 84 FNDSRLNGYVSTGLTQNLTVLQAIERINQAQSNITVAGAGSLPSLTSTFRHQTQGSGGSL 143 Query: 137 PISGGTPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTVTSGIVSTY 196 P + TNT + + V + +D +G+ R E+A A+L A LT+ S + S Y Sbjct: 144 PSTNDNVTNTTSNAFNVGWLLDLFGQYRRAQESAGASLDAAYATANVQRLTLISAVTSAY 203 Query: 197 LQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQRQLIPDLQQ 256 + V ++RL IARQN+ + L L + Q AGAAS LD+ + + + +P L+ Sbjct: 204 IDVRYYQERLAIARQNLGSRRETLSLTKLQLDAGAASRLDVVQSEGLVNSTLAQMPALET 263 Query: 257 QEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPRI--SAGLPSELLTRRPDIRRAEANLA 314 + A +A LLG P + +E + A+ + R G+P++L+ RPDIR AE LA Sbjct: 264 NFRRAAHRIATLLGMPADSLVMELQRGARQPVARTIPRTGIPADLIRNRPDIRVAERQLA 323 Query: 315 AANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFDGGNLRNQ 374 AA A++ VA A L+PSI+L+GS + + + G + G S+ PI DGG LR Sbjct: 324 AAVADIGVAEAQLYPSITLSGSITPSFTKISNGASGTSNGWGFGPSITLPILDGGRLRAG 383 Query: 375 QALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFAFELAEIR 434 + ++ E ++ V+ ++ EVE AL A+ ++ V + A LA Sbjct: 384 VDIQKSVAREQYLAWKATVLNAVEEVENALTALNRDQQTVSAYRRTVSSYQEALSLATAS 443 Query: 435 YRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGWQDKQVPTETGTAS 494 YR GA LL VLD QR +S+AQ+QL Q Q V+L ALGGG+ Q T G + Sbjct: 444 YRDGASSLLDVLDAQRNVSDAQSQLATAIQQAAQDYVALSVALGGGYAVGQTATSKGGPT 503 Query: 495 VS 496 ++ Sbjct: 504 IA 505 >RSc0166 [MU] COG1538 Outer membrane protein Rso Ralstonia solanacearum Length = 480 Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 144/414 (34%), Positives = 215/414 (51%), Gaps = 9/414 (2%) Query: 77 DWWKQFGSSELSELVQEGQRNNYEIAAAYSRVKQAQAQARIAGAPLLPNVGLSAGATREM 136 DWW F S L LV E R + +A A +R+++AQAQA +LP+V SA A R+ Sbjct: 67 DWWHLFQSHALDALVDEALRASPTVAQAAARLREAQAQADAQFGAVLPSVDGSASAVRQQ 126 Query: 137 --PISGG------TPTNTANASLQVSYEIDFWGKNRAGVEAAEATLRANRYDQQTVALTV 188 P + G P +ASL VSY +D +G R +EA+ A + RY+ + L++ Sbjct: 127 VNPEAFGFNTPKPGPFTLYSASLSVSYALDLFGGVRRALEASRAQVDMQRYELEAARLSL 186 Query: 189 TSGIVSTYLQVLSLRDRLEIARQNVNNAERVLRLVEAQSRAGAASPLDLARQRSALANQR 248 +V+ +++ SL ++ ++ + L + E + AG + +D+ QR+ +A Sbjct: 187 AGNVVTAAVRIASLDAQIATTQRLLAAQRDQLVITERRFGAGGVARVDVLSQRTQVAQTE 246 Query: 249 QLIPDLQQQEQDAQTALAILLGRPPQNFKVEEKGLAKIQMPR-ISAGLPSELLTRRPDIR 307 +P L QQ A+ L++LLGR P + L +++P + LPS L RRPDIR Sbjct: 247 ATLPPLAQQAAQARHRLSVLLGREPGAGLPDLPPLDALRLPDPLPVSLPSTLAQRRPDIR 306 Query: 308 RAEANLAAANANVAVARAALFPSISLTGSTGAQSSALLSLFDGPNLFASLGASLIAPIFD 367 AEA A+ANV VA A LFP I+L+ G+Q++ +L + SLG SL P+F Sbjct: 307 VAEAMWHEASANVGVATANLFPRITLSAELGSQTTGFRNLLGAGSSIWSLGGSLTQPLFH 366 Query: 368 GGNLRNQQALAEAQKEELVQVYRQRVITSLSEVEKALGAIRSLEERYRLKVGEVDQARFA 427 GG LR ++ AEA + YRQ V+ L EV AL A+ + + + DQA A Sbjct: 367 GGTLRARKREAEAAYDAAGAAYRQAVLQGLQEVADALHAVHNDARTLQARALATDQATQA 426 Query: 428 FELAEIRYRAGAEDLLVVLDTQRTLSEAQNQLGQIKLQRLQATVSLYKALGGGW 481 + RY AG L +LD QR + +A Q Q + RL + +L +ALGGGW Sbjct: 427 LRTEQARYAAGGISTLALLDAQRQVDQAMLQQVQSRADRLLDSAALMQALGGGW 480