BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3374.p (351 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1174 [R] COG4174 ABC-type uncharacterized transport system, p... 512 e-145 BMEI1936 [R] COG4174 ABC-type uncharacterized transport system, ... 442 e-124 mll5491 Non COG 441 e-124 SMc02831 [R] COG4174 ABC-type uncharacterized transport system, ... 431 e-120 PA1809 [R] COG4174 ABC-type uncharacterized transport system, pe... 422 e-118 >RSc1174 [R] COG4174 ABC-type uncharacterized transport system, permease component Rso Ralstonia solanacearum Length = 351 Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust. Identities = 259/351 (73%), Positives = 314/351 (89%), Gaps = 2/351 (0%) Query: 3 IWAYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGR-SGVHESAGGGG-AY 60 ++AY++KR+LL+IPTL+GV+ +TF VIQFVPGGPVEQM+ E++GR SG+ E++GGGG Y Sbjct: 1 MFAYLIKRLLLLIPTLIGVVTLTFVVIQFVPGGPVEQMLMEMKGRGSGIVEASGGGGMEY 60 Query: 61 RGRQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWALVKSKMPV 120 RGR+GVDPE++KEI+ALYGFDK P+ER++LML FA FDLG S++ H VW L+KSK+PV Sbjct: 61 RGRRGVDPEKIKEIRALYGFDKGPVERYFLMLGRFARFDLGESYFQHRSVWELIKSKLPV 120 Query: 121 SISIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVFLLVVFGG 180 SISIGLWTFF+TYLISVPLGIAKAVRAGSRFD ++S +VLVGY+IPGFVLGV LLV+FGG Sbjct: 121 SISIGLWTFFLTYLISVPLGIAKAVRAGSRFDLVSSVIVLVGYAIPGFVLGVLLLVLFGG 180 Query: 181 GSFLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTKNTFLEEI 240 G+F QWFP+RGLTSDNW QLS GK++DYLWHI LPI ASV G+FA +TMLTKN FLEEI Sbjct: 181 GTFFQWFPIRGLTSDNWGQLSLPGKVTDYLWHIALPITASVVGSFAVITMLTKNAFLEEI 240 Query: 241 RKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLG 300 RKQYVLTAR+KGLSERRVL+KH+FRNA+IPLVTGFPAAFIGAFF GSLLIE LFSLDG+G Sbjct: 241 RKQYVLTARSKGLSERRVLWKHIFRNAMIPLVTGFPAAFIGAFFTGSLLIEKLFSLDGMG 300 Query: 301 LLSYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFESLAK 351 L+SYE+V++RDYPVV+GTLY+FTLIGL +LI D+CYV VDPR+ F ++ + Sbjct: 301 LMSYEAVVQRDYPVVLGTLYVFTLIGLATRLISDVCYVLVDPRIHFGAIGR 351 >BMEI1936 [R] COG4174 ABC-type uncharacterized transport system, permease component Bme Brucella melitensis Length = 365 Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust. Identities = 208/359 (57%), Positives = 273/359 (76%), Gaps = 16/359 (4%) Query: 5 AYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGRSG--------------- 49 AYIL+R+LLM+PTLLG++AI+FAV+QF PGGPVE+++ +L G+ G Sbjct: 3 AYILRRLLLMVPTLLGIMAISFAVVQFAPGGPVERVIAQLSGQGGDALDRLSGAGSDFGQ 62 Query: 50 -VHESAGGGGAYRGRQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHA 108 +S YRG QG+DP+ + +++ +GFDKPPLERF ML + FD GRS++ Sbjct: 63 SAIDSGSVNSKYRGAQGLDPQFIADLEKQFGFDKPPLERFGQMLWNYMRFDFGRSYFRDI 122 Query: 109 DVWALVKSKMPVSISIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGF 168 V L+K KMPVSIS+GLW F++Y+IS+PLGI KA++ GSRFD+ TSAV+++GY+IP F Sbjct: 123 SVIDLIKEKMPVSISLGLWLTFLSYMISIPLGIRKAIKDGSRFDTWTSAVIIIGYAIPSF 182 Query: 169 VLGVFLLVVFGGGSFLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATM 228 + + L+VVF GGSF WFPLRGLTS ++ Q++WF KI DYLWH+ LP+ A V AFAT Sbjct: 183 LFAILLIVVFAGGSFFDWFPLRGLTSPDFAQMTWFEKIKDYLWHMVLPVTALVLSAFATT 242 Query: 229 TMLTKNTFLEEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSL 288 T+LTKN+FLEEIRKQYV TARAKGL+E +VLY+HVFRNA++ ++ GFP AFI AFF GSL Sbjct: 243 TLLTKNSFLEEIRKQYVTTARAKGLTENQVLYRHVFRNAMLIVIAGFPGAFISAFFTGSL 302 Query: 289 LIETLFSLDGLGLLSYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFE 347 LIET+FSLDGLGLL Y+SV+ RDYPVV L++F+LIGL+V L+ DL Y W+DPR+ F+ Sbjct: 303 LIETIFSLDGLGLLGYQSVINRDYPVVFANLFIFSLIGLLVGLLSDLTYTWIDPRIDFD 361 >mll5491 Non COG Length = 364 Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/358 (60%), Positives = 268/358 (74%), Gaps = 15/358 (4%) Query: 5 AYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGR---------------SG 49 AYIL+RILLMIPTL G++AI+FAVIQF PGGPVEQ++ +L + + Sbjct: 3 AYILRRILLMIPTLFGIMAISFAVIQFAPGGPVEQVIAKLTNQGGSDRLGGGGGDAGGTN 62 Query: 50 VHESAGGGGAYRGRQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHAD 109 + YRG QG+DPE +K+++ +GFDKPPLERF +ML + FD G S++ Sbjct: 63 FDVAGDVSSKYRGAQGLDPEFIKKLEKQFGFDKPPLERFGMMLWNYIRFDFGNSYFRDIS 122 Query: 110 VWALVKSKMPVSISIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFV 169 V L+ KMPVSISIGLW ++YLIS+PLGI KAV+ G+ FD TS VV+VGY+IPGF+ Sbjct: 123 VLDLILEKMPVSISIGLWITLLSYLISIPLGIRKAVKDGTPFDVWTSGVVIVGYAIPGFL 182 Query: 170 LGVFLLVVFGGGSFLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMT 229 G+ L+V+F GGSF WFPLRG+ SDNW+QLSW GKI+DY WH+TLP+ A V AFAT T Sbjct: 183 FGIMLMVLFAGGSFWDWFPLRGIVSDNWDQLSWLGKIADYFWHMTLPLTALVLSAFATTT 242 Query: 230 MLTKNTFLEEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLL 289 +LTKN+FLEEIRKQYV+TARAKGLSER+VLY HVFRNA++ ++ GFP AFI AFF GSLL Sbjct: 243 LLTKNSFLEEIRKQYVVTARAKGLSERQVLYGHVFRNAMLIVIAGFPGAFISAFFTGSLL 302 Query: 290 IETLFSLDGLGLLSYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFE 347 IE +FSLDGLGLL + SV+ RDYPVV LY+F+L+GL V L+ DL Y WVDPR+ FE Sbjct: 303 IENIFSLDGLGLLGFRSVVERDYPVVFANLYIFSLLGLFVGLLSDLIYTWVDPRIDFE 360 >SMc02831 [R] COG4174 ABC-type uncharacterized transport system, permease component Sme Sinorhizobium meliloti Length = 360 Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/354 (56%), Positives = 267/354 (75%), Gaps = 11/354 (3%) Query: 5 AYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGRSGVHESAGGGG------ 58 AYIL+R+LLMIPT++G++AI+FAV+QF PGGPVEQ++ +L +G +G G Sbjct: 3 AYILRRLLLMIPTIVGIMAISFAVVQFAPGGPVEQVISDLTNAAGSDRLSGNAGDLMPVG 62 Query: 59 -----AYRGRQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWAL 113 YRG QG+DP+ + +++ +GFDKPPLERF M+ + FD G SF+ + V L Sbjct: 63 GGDGGQYRGAQGLDPDFIAKLEKQFGFDKPPLERFVTMMWDYMRFDFGESFFRNTPVIDL 122 Query: 114 VKSKMPVSISIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGVF 173 + KMPVSIS+G+W +Y IS+PLGI KAV GS FD TS V++VGY++P F+ G+ Sbjct: 123 IIQKMPVSISLGVWILIFSYAISIPLGIKKAVSDGSTFDVWTSGVIIVGYAVPSFLFGIL 182 Query: 174 LLVVFGGGSFLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLTK 233 L+V+F GGSF WFPLRGL SDN++QLSW+ KI DY WH+TLP+I + AFAT T+LTK Sbjct: 183 LIVLFAGGSFFDWFPLRGLVSDNFDQLSWYEKIIDYFWHMTLPLITLLLSAFATTTLLTK 242 Query: 234 NTFLEEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETL 293 N+F++EI+KQYV TARAKGL+ERRVLY HVFRNA++ ++ GFP AFI AFF GSLLIE + Sbjct: 243 NSFIDEIKKQYVTTARAKGLTERRVLYGHVFRNAMLIIIAGFPGAFISAFFTGSLLIEYI 302 Query: 294 FSLDGLGLLSYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFE 347 FSLDGLG L Y++V++RDYP+V TL++++L+GLVV L+ DL Y WVDPR+ FE Sbjct: 303 FSLDGLGRLGYDAVVKRDYPIVFATLFIYSLMGLVVSLVSDLIYTWVDPRIDFE 356 >PA1809 [R] COG4174 ABC-type uncharacterized transport system, permease component Pae Pseudomonas aeruginosa Length = 360 Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/356 (57%), Positives = 265/356 (74%), Gaps = 12/356 (3%) Query: 5 AYILKRILLMIPTLLGVIAITFAVIQFVPGGPVEQMVQELRGRSGVHESAGG-------- 56 +YIL+R+LL++PTL G++ I F +IQ PGGPVEQM+ +L G A G Sbjct: 3 SYILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGE 62 Query: 57 ----GGAYRGRQGVDPERVKEIKALYGFDKPPLERFWLMLKGFATFDLGRSFYHHADVWA 112 G YRG QG+DPE VKEI+ +YGFDK ERF +MLK + D G+SF+ A V Sbjct: 63 VAVAGSQYRGAQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTD 122 Query: 113 LVKSKMPVSISIGLWTFFITYLISVPLGIAKAVRAGSRFDSITSAVVLVGYSIPGFVLGV 172 L+ K+PVSIS+GLW+ I YL+S+PLGIAKAVR GS FD TS+ ++VGY+IP F+ + Sbjct: 123 LIIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAI 182 Query: 173 FLLVVFGGGSFLQWFPLRGLTSDNWEQLSWFGKISDYLWHITLPIIASVAGAFATMTMLT 232 L+V+F GGS+ WFPLRGLTS+N++QLS GK+ DY WH+ LP+ A V G FAT+T+LT Sbjct: 183 LLVVLFAGGSYWDWFPLRGLTSNNFDQLSLGGKVLDYFWHLALPVTALVIGNFATITLLT 242 Query: 233 KNTFLEEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIET 292 KN+FL+EI KQYV+TARAKGL+ERRVLY HVFRNA++ ++ G PAA +G FF GSLLIE Sbjct: 243 KNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLPAALLGIFFTGSLLIEV 302 Query: 293 LFSLDGLGLLSYESVLRRDYPVVMGTLYLFTLIGLVVKLIGDLCYVWVDPRVQFES 348 +FSLDGLGLLS+E+ + RDYPVV GTL++FTL GLV+KLI D+ Y VDPR+ FE+ Sbjct: 303 IFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIVYTLVDPRIDFEN 358