BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3359.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing prot... 283 2e-76 PA2337 [K] COG2207 AraC-type DNA-binding domain-containing prote... 221 1e-57 mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing prot... 210 3e-54 AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing prot... 150 4e-36 VC1260 [K] COG2207 AraC-type DNA-binding domain-containing prote... 112 7e-25 >AGl1086 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 188/283 (66%), Gaps = 1/283 (0%) Query: 1 MSPDLELVHTRQDESFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFAPG 60 M PDLELVH R+ ESF AW H YP +WH+HPEYE+H++ A+SG F++GDF+G F+PG Sbjct: 12 MQPDLELVHIRKGESFAAWRHGYPFRTVRWHYHPEYEIHLVVATSGTFYIGDFVGRFSPG 71 Query: 61 NLVLTGPNLPHNWVSNLGAGDQLPSRDLVLQFSRAFAQRVLGAIPELAPLQDLLDGAARG 120 L++TGPNLP NW+S + + +P+R LV+QF +F + ++ E+ ++ LLD + RG Sbjct: 72 QLIMTGPNLPQNWISEIEPDEIVPTRSLVIQFPESFIEDACTSMAEMDVVRALLDRSRRG 131 Query: 121 LQFPDALGVAITPLMQDLAQASGAKRVVLMMAVLEQLASCPQRRPLAGPGYEVHAQRHMS 180 + F D + PL+ L +A G R+ L +L+ L + P LA YE+ Sbjct: 132 ILFDDETSDRVRPLVLRLIEAQGLTRLALFWEILDLLVNAPSSEVLASLSYELDLTGIGD 191 Query: 181 STINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKRHTGSTFIQYQNGLRLNEACE 240 S IN+ LS++ Q+L + E D+A++ G S S+F+R FKRHTG+T ++Y+N LR++ AC+ Sbjct: 192 SGINRALSHLRQHLTEQVEEIDLADMVGQSPSAFSRAFKRHTGTTLVRYRNQLRIDLACQ 251 Query: 241 LLMCT-ELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFRAL 282 +L+ ++ V EVCY VGF+NLSNFNR FL KGM PSRFR + Sbjct: 252 MLLADQDVKVAEVCYDVGFSNLSNFNRHFLKLKGMSPSRFRTI 294 >PA2337 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 301 Score = 221 bits (564), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/281 (40%), Positives = 166/281 (59%), Gaps = 1/281 (0%) Query: 3 PDLELVHTRQDESFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFAPGNL 62 P EL+ + S H +P + +WHFH EYE+H+I ASSGK F+GD+IG+FAP L Sbjct: 10 PSYELMDDHEGHSLIYRQHGFPSPLVRWHFHKEYELHLIVASSGKVFIGDYIGNFAPDTL 69 Query: 63 VLTGPNLPHNWVSNLGAGDQLPSRDLVLQFSRAFAQRVLGAIPELAPLQDLLDGAARGLQ 122 LTGPNLPHNW+S + + + RD+++ F+ + G EL L LL A G++ Sbjct: 70 FLTGPNLPHNWISQVEPDEVVARRDMLVNFTDEVLEDGSGVFSELNRLAPLLARARYGIE 129 Query: 123 FPD-ALGVAITPLMQDLAQASGAKRVVLMMAVLEQLASCPQRRPLAGPGYEVHAQRHMSS 181 F D AL L+Q +A + G R+ ++EQLA C + L+ A H Sbjct: 130 FRDPALIGESRRLLQRIADSGGMTRLGYFFILMEQLAECEDYQLLSTVTSSQLADEHNVE 189 Query: 182 TINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKRHTGSTFIQYQNGLRLNEACEL 241 IN+ + YI Q+ +L + VA GM+ + F+RFFK+ G F+++ N LR++++CEL Sbjct: 190 RINRAVDYIFQHYAQDLTQEQVAAHLGMTPTYFSRFFKQAAGRGFVEFVNRLRISKSCEL 249 Query: 242 LMCTELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFRAL 282 L +EL VTEVC+ GF+NLSNFNR+F KGM P+ +R L Sbjct: 250 LARSELPVTEVCFESGFSNLSNFNRRFQQLKGMTPTGYRRL 290 >mlr4907 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 305 Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/293 (37%), Positives = 172/293 (58%), Gaps = 6/293 (2%) Query: 2 SPDLELVHTRQDESFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFAPGN 61 +P E + T +SF + DYP W+FHPEYE+H++ SSG VGD IG+F PG Sbjct: 16 APAFEHIVTEASDSFLWRLDDYPWERNVWNFHPEYEIHLLRKSSGVVLVGDHIGEFGPGY 75 Query: 62 LVLTGPNLPHNWVSNLGAGDQLPSRDLVLQFSRAFAQRVLGA---IPELAPLQDLLDGAA 118 L + G LPH+WV+ + G+ + RD+VLQF AQR+ G+ +PEL L+ L+ + Sbjct: 76 LTIVGGGLPHDWVTAVRPGELIEGRDIVLQFD---AQRLRGSAGLLPELRELEPFLERSL 132 Query: 119 RGLQFPDALGVAITPLMQDLAQASGAKRVVLMMAVLEQLASCPQRRPLAGPGYEVHAQRH 178 RG+ F + LM+ + G R+ L + +++ LA + L+ P + Sbjct: 133 RGMVFHGRTALEGAGLMERMGTVHGLARLCLFLELVDLLARTDEYELLSSPDFSPVLDAA 192 Query: 179 MSSTINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKRHTGSTFIQYQNGLRLNEA 238 I + L+Y+ Q+ +L+ DVAE AGMS S+F+RFF+++TG++F + LRL +A Sbjct: 193 SLDIIQRTLTYLFQHFAEDLKLPDVAERAGMSESTFSRFFQKNTGNSFSDHLAKLRLWQA 252 Query: 239 CELLMCTELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFRALHRLNDEARA 291 C+LL T++++T++C++VG+ N+SNFNR FL M PS +R L R RA Sbjct: 253 CKLLADTDVAITDICFQVGYMNISNFNRAFLRKHKMTPSSYRKLSRQRLTMRA 305 >AGl1135 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 143/280 (51%) Query: 1 MSPDLELVHTRQDESFRAWVHDYPHTVAKWHFHPEYEVHVITASSGKFFVGDFIGDFAPG 60 M P E V D S+ + P WH+HPE+E+ + S+G FVGD + ++ G Sbjct: 17 MEPWFEAVSVPADRSWLLFDRRLPEFPFNWHYHPEFELTLTLNSAGMRFVGDSVENYGDG 76 Query: 61 NLVLTGPNLPHNWVSNLGAGDQLPSRDLVLQFSRAFAQRVLGAIPELAPLQDLLDGAARG 120 +LVL GPNLPH W S+ R +V F+R + + ++ PEL+ + LL + G Sbjct: 77 DLVLLGPNLPHAWQSHGLINAPGVHRAVVCWFTRDWIEGLIALTPELSAITPLLVESGHG 136 Query: 121 LQFPDALGVAITPLMQDLAQASGAKRVVLMMAVLEQLASCPQRRPLAGPGYEVHAQRHMS 180 + F + + + L + + ++++ ++ VL LA RRPL+ Sbjct: 137 ICFGEDALAKVGERLATLHKIAPEQQILTLLGVLVDLARVSDRRPLSAGEVTASTAPRDR 196 Query: 181 STINQVLSYIAQNLGGNLRETDVAELAGMSVSSFTRFFKRHTGSTFIQYQNGLRLNEACE 240 + + +VL++I + G + ++E+A +S S R FKR T T QY LR+ AC Sbjct: 197 ARMQRVLNHIHAHYIGTISIKPLSEIAHLSDSQLQRLFKRSTRMTISQYIGQLRVGGACR 256 Query: 241 LLMCTELSVTEVCYRVGFNNLSNFNRQFLAYKGMPPSRFR 280 LL T+LS+ + GF++ ++F+RQF A +GM P +R Sbjct: 257 LLAQTDLSLARIAEETGFSDAAHFSRQFRAARGMTPGDYR 296 >VC1260 [K] COG2207 AraC-type DNA-binding domain-containing proteins Vch Vibrio cholerae Length = 299 Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 17/263 (6%) Query: 30 WHFHPEYEVHVITASS----GKFFVGDFIGDFAPGNLVLTGPNLPHNWVSNLGAGDQLPS 85 WH+H EYE+ + G +F GD IG L+L GP LPH + AG QL + Sbjct: 34 WHYHTEYELVLYQNPDQRFVGNYFAGDAIGAVEHNTLLLYGPGLPH-----MIAGRQLIN 88 Query: 86 R-----DLVLQFSRAFAQRVLGAIPELAPLQDLLDGAARGLQFPDALGVAITPLMQDLAQ 140 + ++ F + + ++ +P+ LQ L A+ G++ + + L+ ++ Q Sbjct: 89 KAQTLHSTIIWFKQEWLDKLQSVLPQAQALQRLQQHASYGVRLSEQTATRVAELLANVDQ 148 Query: 141 ASGAKRVVLMMAVLEQLASCPQRRPLAGPGYEVHAQRHMSST---INQVLSYIAQNLGGN 197 + + + ++ L +A Q + L+ Y + A S T I Y+ Q+ Sbjct: 149 QPHSYQSLRVIESLLVMADDAQAQRLSVAPYVMTALTSNSDTHKKIQLAKQYVEQHYAQA 208 Query: 198 LRETDVAELAGMSVSSFTRFFKRHTGSTFIQYQNGLRLNEACELLMCTELSVTEVCYRVG 257 ++ TD+ +S SS R F++H G +F ++ R+ +ACELL + L + + R G Sbjct: 209 IKITDLCHQLHLSESSAYRLFEKHYGMSFSEHLKQFRIGKACELLASSALPIALIAERTG 268 Query: 258 FNNLSNFNRQFLAYKGMPPSRFR 280 F NLSNFNRQF K M P FR Sbjct: 269 FGNLSNFNRQFKTLKTMTPREFR 291