BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3356.p (270 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr4913 [G] COG0395 ABC-type sugar transport system, permease co... 280 2e-75 PA2340 [G] COG0395 ABC-type sugar transport system, permease com... 149 9e-36 mll5300 [G] COG0395 ABC-type sugar transport system, permease co... 127 2e-29 TM0279 [G] COG0395 ABC-type sugar transport system, permease com... 122 7e-28 TP0076 [G] COG0395 ABC-type sugar transport system, permease com... 122 9e-28 >mlr4913 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 276 Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 155/269 (57%), Positives = 196/269 (72%), Gaps = 4/269 (1%) Query: 2 GRLIARGAVWGVGLLLVLVAVFPLLWALLNSLKTLLDIVTPTPRFIFTPTLENYRQVIGS 61 GRLI + + G L AVFPLLW LN+LK +DI+T PR +FTPT N ++G Sbjct: 10 GRLIGKATLALAGFL----AVFPLLWTALNALKNNVDIITRVPRLVFTPTWANIGYILGR 65 Query: 62 PEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVAI 121 VL GL NS V GSAVL+G ++G+PAAY +ARY DIQFF+LSLRFLPPVAVAI Sbjct: 66 DSVLTGLYNSVVACGSAVLIGIVLGLPAAYAVARYPNRWAGDIQFFVLSLRFLPPVAVAI 125 Query: 122 PLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAVF 181 PL+ IW+ +GLYDT ++I+TY L T+S I WL+IP FQ +P+EIEEAA +DGYG Y+VF Sbjct: 126 PLMVIWLQVGLYDTLPALIITYSLLTISVIMWLAIPAFQSVPKEIEEAAFVDGYGAYSVF 185 Query: 182 CKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSLGQEVPWGVI 241 +IALP A +L G + FSFVLVWNE +IAL L+SSN+ TLP+VAS + G VPWG++ Sbjct: 186 WRIALPVAARSLAGAVAFSFVLVWNEFLIALMLSSSNAKTLPIVASELSQQGMNVPWGIL 245 Query: 242 NASTVLLALPPLIFVGVLSRLLNTMLNPK 270 NAS VLL+LPPL+F+GVLS LN++ K Sbjct: 246 NASVVLLSLPPLLFLGVLSGFLNSVFRQK 274 >PA2340 [G] COG0395 ABC-type sugar transport system, permease component Pae Pseudomonas aeruginosa Length = 277 Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 5/246 (2%) Query: 10 VWGVGLLLVLVAVFPLLWALLNSLKTLLDIVTPTPRFIFTPTLENYRQVIGSPEVLVGLT 69 WG+ LLL FP+ W LL S K+ +D P+FIF PTLENY + + Sbjct: 19 CWGIALLLF----FPIFWMLLTSFKSEIDAFATPPQFIFQPTLENYLHINERSDYFAYAW 74 Query: 70 NSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVAIPLIAIWVD 129 NS +I SA LL L+ VPAAY +A + + ++LS + LPPV V +P+ + Sbjct: 75 NSLLISSSATLLCMLVAVPAAYSMAFFETRHTKRTLLWMLSTKMLPPVGVLMPIYLLAKQ 134 Query: 130 LGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAVFCKIALPNC 189 GL D+R ++I+ Y L L + W+ F+ +P +I EAA LDG G + ++ LP Sbjct: 135 FGLLDSRLALIIVYTLINLPIVVWMVYTYFKDIPVDILEAARLDGAGTWQEIVRVLLPIA 194 Query: 190 AGTLLGGIIFSFVLVWNELMIALALTSSNSATLPVVASAFTSLGQEVPWGVINASTVLLA 249 G L ++ S +L WNE +L LTSS +A L + ++++S + + W ++A + L Sbjct: 195 RGGLASTLLLSLILCWNEAFWSLNLTSSAAAPLTALVASYSS-PEGLFWAKLSAVSTLAC 253 Query: 250 LPPLIF 255 P L+F Sbjct: 254 APILVF 259 >mll5300 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 316 Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 85/274 (31%), Positives = 122/274 (44%), Gaps = 36/274 (13%) Query: 24 PLLWALLNSLKTLLDIVTPTPRFIFTPTLENY--------RQ------------------ 57 PLLW S KT D + P+ +F P++E Y RQ Sbjct: 34 PLLWIFATSFKTPPDSIAYPPKIVFQPSIEGYCNLFTTRTRQTPEYINSLGPATGFCDET 93 Query: 58 -------VIGSPEVLVGLTNSAVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLS 110 + G L NS +I + +G +AY +R+ VP D+ FF+LS Sbjct: 94 VRKRNMVIAGPSNFLPRFLNSLIIAFGSTFCAVFLGTLSAYGFSRFKVPLADDLLFFILS 153 Query: 111 LRFLPPVAVAIPLIAIWVDLGLYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAA 170 RF+PP+AVAIP+ ++ +LGL DT MI+ Y +S WL +PRE EEAA Sbjct: 154 TRFMPPIAVAIPIYLMYRELGLSDTALGMILLYTAVNVSLAVWLLKGFIDEIPREYEEAA 213 Query: 171 TLDGYGPYAVFCKIALPNCAGTLLGGIIFSFVLVWNELMIALALTSSNSATL-PVVASAF 229 +DGY F + LP + IF + WNE A LTS + T P + + Sbjct: 214 MIDGYTRLQAFWRTVLPQATTGIAATAIFCLIFAWNEYAFAALLTSGTAQTAPPFIPTII 273 Query: 230 TSLGQEVPWGVINASTVLLALPPLIFVGVLSRLL 263 GQ+ W + A T + +P L+F +L + L Sbjct: 274 GEGGQD--WPAVAAGTTIFLVPILVFTILLRKQL 305 >TM0279 [G] COG0395 ABC-type sugar transport system, permease component Tma Thermotoga maritima Length = 281 Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 87/253 (34%), Positives = 137/253 (54%), Gaps = 14/253 (5%) Query: 23 FPLLWALLNSLKTLLDIVTPTPRFIFT-PTLENY-----RQVIGS-----PEVLVGLTNS 71 FP+ W ++ + K + T PRF T PTL N+ +V G + L NS Sbjct: 23 FPVYWLVITAFKPSDEWFTMPPRFFPTKPTLANFFGAKETEVFGGTTGSIENIFPYLRNS 82 Query: 72 AVIVGSAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVAIPLIAIWVDLG 131 V+ S L+GT++ AAY IARY V G ++ ++S+R LPP+ A+PL I+ L Sbjct: 83 IVVGVSVALIGTVISALAAYAIARYRVGGPFLAEW-IISIRMLPPIVSAVPLYVIFTKLR 141 Query: 132 LYDTRFSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAVFCKIALPNCAG 191 L +T +++I+++L+ + WL I F+ +PREI+EAA +DG P+ F + LP A Sbjct: 142 LINTWWALILSHLVIVVPLGVWLLISFFREIPREIDEAAYVDGATPFQAFFYVVLPLSAP 201 Query: 192 TLLGGIIFSFVLVWNELMIALALTSSNSA-TLPVVASAFTSLGQEVPWGVINASTVLLAL 250 L + S + W E ++AL LT+ A TLP+ + + G V WG ++A+ ++ L Sbjct: 202 GLAAVAVLSLIQSWGEFLLALVLTNDARAQTLPIFLGRYIT-GWRVAWGPLSAAGIVTML 260 Query: 251 PPLIFVGVLSRLL 263 P ++F V R L Sbjct: 261 PVVVFALVAQRYL 273 >TP0076 [G] COG0395 ABC-type sugar transport system, permease component Tpa Treponema pallidum Length = 273 Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 125/247 (50%), Gaps = 1/247 (0%) Query: 17 LVLVAVFPLLWALLNSLKTLLDIVTPTPRFIFTPTLENYRQVIGSPEVLVGLTNSAVIVG 76 + LV++FPL + SLK D P + F PT+ENYRQ++ L NS V+ Sbjct: 20 IALVSMFPLYEMVATSLKRDADAFRLPPAWFFIPTIENYRQLLQEHHFGRALYNSLVVTL 79 Query: 77 SAVLLGTLMGVPAAYVIARYHVPGKRDIQFFLLSLRFLPPVAVAIPLIAIWVDLGLYDTR 136 S+ ++ G AAY + R+ GK+ I LL LR +PPV + IP+ W LGL ++ Sbjct: 80 SSTVVSVSAGAAAAYAMQRFRYRGKKAITVALLLLRVIPPVVLVIPIFVWWTALGLVNSL 139 Query: 137 FSMIVTYLLTTLSTITWLSIPVFQRMPREIEEAATLDGYGPYAVFCKIALPNCAGTLLGG 196 + + Y + W+ +P ++E+A LDG + +F +I +P L Sbjct: 140 AGLALVYGALNVPFNVWVITTFVAEIPPSLDESAKLDGCSHWMIFTRIVMPLITPALALV 199 Query: 197 IIFSFVLVWNELMIALALTSSNSATLPVVASAFTSLGQEVPWGVINASTVLLALPPLIFV 256 IF+F WNE M+ ALT+ + TLPV S F + V WG I A+ L+A+P +F Sbjct: 200 SIFTFRFAWNEYMLGFALTNRKTRTLPVALSLFLT-DSGVEWGRITAAATLIAIPACVFT 258 Query: 257 GVLSRLL 263 ++ L Sbjct: 259 FAAAKYL 265