BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3340.p (218 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all1847 [NT] COG2201 Chemotaxis response regulator containing a ... 144 1e-34 SMb20514 [NT] COG2201 Chemotaxis response regulator containing a... 117 3e-26 CAC2222 [NT] COG2201 Chemotaxis response regulator containing a ... 109 4e-24 YPO1679 [NT] COG2201 Chemotaxis response regulator containing a ... 98 1e-20 AF1041 [NT] COG2201 Chemotaxis response regulator containing a C... 97 3e-20 >all1847 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Nos Nostoc sp. PCC 7120 Length = 190 Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 4/190 (2%) Query: 20 SIEAIVIGASAGGVEALSEILPALRRGAAVATMVVLHIPRERPSLLASIFADRCAQPVVE 79 S + +VIG S GG+ AL +L L + +V H + L + + PV E Sbjct: 2 SYKIVVIGTSLGGLSALQTVLGNLPADFQLPVAIVQHRHKNSDGTLRGMIQESALLPVRE 61 Query: 80 AQDKEPAQAGVIYFAPPDYHLLVDRGEEGPLLAMSNDELVNFSRPAIDVLFESAADVYGP 139 +DK+ G +Y AP DYHLLV+ G A+S DE V+++RP+IDVLFESAAD+YG Sbjct: 62 VEDKDEILPGQVYLAPADYHLLVEPG----YFALSTDEPVSYARPSIDVLFESAADIYGE 117 Query: 140 QLLGIVLTGGNHDGAAGLQAIARAGGVTVVQSPQQAQVPYMPAQALALGNIDYVLTLPQI 199 Q++G++LTG N DG GL+ I GG+TVVQ P A MP A++ +D++++L +I Sbjct: 118 QVIGVILTGANQDGMQGLKKIKARGGITVVQEPTTAASAIMPTAAISAVTVDWIVSLSEI 177 Query: 200 ADLLRTLGVT 209 + LL LG + Sbjct: 178 SPLLVNLGYS 187 >SMb20514 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Sme Sinorhizobium meliloti Length = 405 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/185 (41%), Positives = 97/185 (52%), Gaps = 4/185 (2%) Query: 22 EAIVIGASAGGVEALSEILPALRRGAAVATMVVLHIPRERPSLLASIFADRCAQPVVEAQ 81 + I IG S G V AL +L L A A VV+H+ LLA I PV A Sbjct: 57 DVIAIGGSLGAVAALKHLLGKLPGDFAAAVFVVIHVGARGKDLLAEILNAHSGIPVTTAV 116 Query: 82 DKEPAQAGVIYFAPPDYHLLVDRGEEGPLLAMSNDELVNFSRPAIDVLFESAADVYGPQL 141 D E + +Y AP D+HLLV G ++ + N +RPA+D LF S YGP+ Sbjct: 117 DGEAVERRHVYVAPADHHLLVIDG----VIRLGRGPRENLARPAVDPLFRSVGLNYGPRA 172 Query: 142 LGIVLTGGNHDGAAGLQAIARAGGVTVVQSPQQAQVPYMPAQALALGNIDYVLTLPQIAD 201 + IVLTG +DGAAGL + R GGVTVVQ+P A P MP AL ++DY L +A Sbjct: 173 VAIVLTGMLNDGAAGLADLKRCGGVTVVQNPSDAVAPDMPMGALRASDVDYRAPLEDLAA 232 Query: 202 LLRTL 206 LL L Sbjct: 233 LLVEL 237 >CAC2222 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Cac Clostridium acetobutylicum Length = 345 Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 3/188 (1%) Query: 14 NDLAGRSIEAIVIGASAGGVEALSEILPALRRGAAVATMVVLHIPRERPSLLASIFADRC 73 N ++ SIEA+VIGAS GG +AL +++ + V VV H+P A D Sbjct: 150 NRISSDSIEAVVIGASTGGPKALYKVITKFPKDMNVPVFVVQHMPVGFTKAFADRLNDNS 209 Query: 74 AQPVVEAQDKEPAQAGVIYFAPPDYHLLVDRGEEGPLLAMSNDELVNFSRPAIDVLFESA 133 A V EA D E + GV+Y AP YH+ VD + ++ + + RPA+D LF SA Sbjct: 210 AIEVKEATDGETYRKGVVYVAPGGYHMEVDSNSR---IKLTKEPPIWGVRPAVDKLFISA 266 Query: 134 ADVYGPQLLGIVLTGGNHDGAAGLQAIARAGGVTVVQSPQQAQVPYMPAQALALGNIDYV 193 + ++ ++ VLTG DG+ G I GGVT+ +S + MP A G +D V Sbjct: 267 SKIFKSHIVSAVLTGMGKDGSNGTGIIKDNGGVTISESETTCVIYGMPKAAFETGKVDLV 326 Query: 194 LTLPQIAD 201 + + +AD Sbjct: 327 VPIDNVAD 334 >YPO1679 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Ype Yersinia pestis Length = 349 Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 20 SIEAIVIGASAGGVEALSEILPALRRGAAVATMVVLHIPRERPSLLASIFADR----CAQ 75 S + I IGAS GG EA+ +L L + A ++ H+P P S FA+R C Sbjct: 155 SEKLIAIGASTGGTEAIRAVLQPLP-PTSPALLITQHMP---PGFTRS-FAERLNKLCQI 209 Query: 76 PVVEAQDKEPAQAGVIYFAPPDYHLLVDRGEEGPLLAMSNDELVNFSRPAIDVLFESAAD 135 V EA+D E G Y AP D HL + R + + + VN RP++DVLF S A Sbjct: 210 TVKEAEDGERVLPGHAYIAPGDRHLELARSGANYQVRIHDGPAVNRHRPSVDVLFRSVAQ 269 Query: 136 VYGPQLLGIVLTGGNHDGAAGLQAIARAGGVTVVQSPQQAQVPYMPAQALALGNIDYVLT 195 G +G++LTG +DGAAGL + RAG T+ Q+ V MP +A+A+G ++ V+ Sbjct: 270 YAGRNAVGVILTGMGNDGAAGLLEMHRAGAYTLAQNEASCVVFGMPREAIAMGGVNDVVE 329 Query: 196 LPQIA 200 L QI+ Sbjct: 330 LNQIS 334 >AF1041 [NT] COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain Afu Archaeoglobus fulgidus Length = 349 Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 97/192 (50%), Gaps = 1/192 (0%) Query: 23 AIVIGASAGGVEALSEILPALRRGAAVATMVVLHIPRERPSLLASIFADRCAQPVVEAQD 82 ++IG+S GG AL I+P L VV H+P LA V EA++ Sbjct: 158 CVLIGSSTGGPSALEMIIPRLPADIPAPVFVVQHMPPGFTKQLAERLNSISEVEVKEAEN 217 Query: 83 KEPAQAGVIYFAPPDYHLLVDRGEEGPLLAMSNDELVNFSRPAIDVLFESAADVYGPQLL 142 E + GV+Y AP YH+ V R + + + E VN +P++DV +S YG ++ Sbjct: 218 NERVKDGVVYVAPGGYHMKVRRAANVVRIKVVDGEPVNAVKPSVDVTADSVVQAYGGNVV 277 Query: 143 GIVLTGGNHDGAAGLQAIARAGGVTVVQSPQQAQVPYMPAQALALGNIDYVLTLPQIA-D 201 G +LTG DGA G++ I GG+T+ S V MP A+ LG I V + +IA + Sbjct: 278 GAILTGMGEDGAYGMKLIKDRGGLTIASSEDTCMVFGMPKAAIELGGITSVKPVFEIAEE 337 Query: 202 LLRTLGVTGNDQ 213 ++R L V N++ Sbjct: 338 IVRFLEVKLNER 349