BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3339.p (372 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4117 [T] COG4251 Bacteriophytochrome (light-regulated signal t... 133 7e-31 all1846_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 130 6e-30 mll2384_1 [T] COG0784 FOG Mlo Mesorhizobium loti 104 3e-22 BS_resE_4 [T] COG0642 Signal transduction histidine kinase Bsu B... 94 4e-19 BH1809 [T] COG0642 Signal transduction histidine kinase Bha Baci... 94 7e-19 >PA4117 [T] COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) Pae Pseudomonas aeruginosa Length = 728 Score = 133 bits (334), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 139 LLALELRERTETLRMNEMFVAILGHDLRNPLSAVVMAATLLQRTYKEEVAQKASQQILNG 198 L+ L L E RM + +A+LGHDLRNPL ++ MAA LL + + + Q I Sbjct: 489 LMELCLNHAAEVDRMRQRLIAVLGHDLRNPLQSISMAAALLSSS--DTRTTELRQHISAS 546 Query: 199 GKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQATYPGSVIERRIEGDD 258 RM +L+ +LD++R + G+ + + ++ ++V E YPG VIE I+ Sbjct: 547 SSRMERLVSQILDMSRLQSGIGLTVNPVDTDVSQLVRQIVCETDVAYPGLVIEIAIDPQV 606 Query: 259 NGFWDGDRLAQVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIANR--GVIPAELLP 316 D DR AQVAANLL NA HG+ G P+ + L R EV L++ N G+ A+L Sbjct: 607 RAVVDPDRYAQVAANLLSNARHHGLPGRPVLVTLT-RQGDEVCLSVLNETSGLSEAQLAN 665 Query: 317 VIFDPFRGGGREIGR-KEGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLPRR 372 +F+PF+ + R + GLG+GL+I+Q I +AH G I + D V T +RLP R Sbjct: 666 -LFEPFKRESADNQRNRNGLGIGLYISQAIAQAHQGRIDVDCRDDVITFC-LRLPVR 720 >all1846_1 [T] COG0784 FOG Nos Nostoc sp. PCC 7120 Length = 152 Score = 130 bits (326), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 67/128 (52%), Positives = 87/128 (67%) Query: 11 PRVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHEVALAFIDVQMPDMD 70 P+V LLVDD ENLLAL A+L+R L+ A SG EAL LL + A+ +DVQMP MD Sbjct: 5 PKVNILLVDDKVENLLALEAILERLGANLVRATSGEEALRCLLHQDFAVILLDVQMPGMD 64 Query: 71 GFELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEPHILRNKAEVF 130 GFE A LIR R+R P+IF+TA ++ LFKGY GAVD+L KPI+ +IL +K VF Sbjct: 65 GFETATLIRNRGRSRQTPIIFLTAFSTSDQMLFKGYALGAVDYLLKPIDANILTSKVTVF 124 Query: 131 FQLYRQKQ 138 +L+++ Q Sbjct: 125 VELFKKTQ 132 >mll2384_1 [T] COG0784 FOG Mlo Mesorhizobium loti Length = 227 Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 85/125 (68%), Gaps = 1/125 (0%) Query: 12 RVKFLLVDDLDENLLALSALLQRDDVELLLARSGLEALELLLQHEVALAFIDVQMPDMDG 71 + + L VDD + NLLA+ +L E++ RSG EAL LL+ + A+ +DV MP +DG Sbjct: 23 KARVLAVDDDERNLLAIQEVLA-PIAEIVAVRSGEEALRCLLKQDFAVILLDVLMPGLDG 81 Query: 72 FELAELIRGSERTRNVPLIFVTAGVRDERRLFKGYESGAVDFLYKPIEPHILRNKAEVFF 131 +E A LIR E+++ PLIF+TA +++ + +GY++GAVD+++KP +P +LR+K VF Sbjct: 82 YETAGLIRQREQSKRTPLIFLTAINKEDAHMLRGYDAGAVDYVFKPFDPVMLRSKVAVFV 141 Query: 132 QLYRQ 136 +L+ + Sbjct: 142 ELHEK 146 >BS_resE_4 [T] COG0642 Signal transduction histidine kinase Bsu Bacillus subtilis Length = 269 Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 12/239 (5%) Query: 144 LRERTETLRMNEM---FVAILGHDLRNPLSAV--VMAATLLQRTYKEEVAQKASQQILNG 198 LR+ TE R++++ F+A + H+LR P+S + A + EE ++ +Q I + Sbjct: 32 LRDMTEERRLDKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYDE 91 Query: 199 GKRMAKLIENMLDLARARLAGGIPLARASACLGEITERVVQEYQ--ATYPGSVIERRIEG 256 RM +L+ ++LDLAR +G L + E E++++++ A ++ I Sbjct: 92 SLRMGRLVNDLLDLARME-SGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISL 150 Query: 257 DDNGF-WDGDRLAQVAANLLGNALQHGVAGSPICIGLDGRSEHEVVLTIANRGV-IPAEL 314 + F +D D++ QV NL+ NAL+H AG + I + + + + I + G IP E Sbjct: 151 TEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDG-LKIDIKDSGSGIPEED 209 Query: 315 LPVIFDPFRGGGREIGR-KEGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLPRR 372 LP IF+ F + R + G GLGL I + IV+AH GSIT+ S T + +P + Sbjct: 210 LPFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIPTK 268 >BH1809 [T] COG0642 Signal transduction histidine kinase Bha Bacillus halodurans Length = 351 Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 115/218 (52%), Gaps = 8/218 (3%) Query: 158 VAILGHDLRNPLSAVV--MAATLLQRTYKEEVAQKASQQILNGGKRMAKLIENMLDLARA 215 V L HDLR PL++V+ + L ++ EE + +R+ +LI+ + ++ R Sbjct: 132 VVNLAHDLRTPLTSVIGYLDLILKEKDLTEEQVRHFLMIAFTKSQRLERLIDELFEITRM 191 Query: 216 RLAGGIPLARASACLGEITERVVQE-YQATYPGSVIER-RIEGDDNGFWDGDRLAQVAAN 273 G +P+ + + L ++ ++ +E Y +I R ++ DG+ LA+V N Sbjct: 192 N-YGMLPVNKKNIDLSDLLLQLKEELYPLFEKNHLIARTNMKTPLPILGDGELLARVFEN 250 Query: 274 LLGNALQHGVAGSPICIGLDGRSEHEVVLTIANRG-VIPAELLPVIFDPFRGGGREIGRK 332 LL NA ++G G I I SE EVV+ I N G IP + LP +FD F G + + Sbjct: 251 LLTNANRYGYDGKFIDINGFIDSE-EVVIQIVNYGDQIPPDELPHVFDMFYTGDKARTKD 309 Query: 333 EGLGLGLFIAQQIVKAHGGSITMTSDDQVQTMVTVRLP 370 + GLGLFIA+ IV+ HGG++T S ++T+ VRLP Sbjct: 310 DSTGLGLFIAKNIVEQHGGTVTADS-SLIRTVFEVRLP 346