BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3321.p         (123 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0674 Non COG                                                       136   1e-32
PA0046 [S] COG4259 Uncharacterized protein conserved in bacteria...   125   3e-29
YPO2971 [S] COG4259 Uncharacterized protein conserved in bacteri...   104   5e-23
NMB1163 [S] COG4259 Uncharacterized protein conserved in bacteri...    79   4e-15
NMB1125 [S] COG4259 Uncharacterized protein conserved in bacteri...    79   4e-15

>RSp0674 Non COG
          Length = 125

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/116 (58%), Positives = 88/116 (75%), Gaps = 4/116 (3%)

Query: 5   KLAAGFALGLALTLSGCAKQQQKSLYGWGNYQDQLYEHFKTEGNGNETEIAALEENLQKM 64
           ++AAG A+G AL L+GCA    KSLY W  YQ Q+YE+FK  G   E ++A LE  L+K+
Sbjct: 12  RVAAGMAVGSAL-LAGCAAGP-KSLYQWEGYQPQVYEYFK--GESKEAQVAELERGLEKI 67

Query: 65  RANNDAVPPGYHAHLGMLYAAVGKEDQLIQELQTEKALFPESAPYMDFLMRNYKKG 120
           ++ N AVPPGYHA LG+LY+ +GK+DQ++QE QTEKALFPES  Y+DFLM+N KKG
Sbjct: 68  KSANGAVPPGYHAQLGLLYSNLGKDDQMVQEFQTEKALFPESGAYIDFLMKNVKKG 123


>PA0046 [S] COG4259 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 117

 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/119 (51%), Positives = 86/119 (72%), Gaps = 4/119 (3%)

Query: 2   MNKKLAAGFALGLALTLSGCAKQQQKSLYGWGNYQDQLYEHFKTEGNGNETEIAALEENL 61
           M+K +    AL  ++ L+GC+    K+LY W  YQ Q++E+FK  G   E +  ALE +L
Sbjct: 1   MSKTITWTAALLGSMALAGCSGP--KTLYQWEGYQAQVHEYFK--GESKEAQAQALEADL 56

Query: 62  QKMRANNDAVPPGYHAHLGMLYAAVGKEDQLIQELQTEKALFPESAPYMDFLMRNYKKG 120
           +K+RA N AVPPGYHA LG+LY+++GK+DQ+++E +TEKALFPESA YMDFL+ N + G
Sbjct: 57  EKIRAKNGAVPPGYHAQLGLLYSSIGKDDQMVREFETEKALFPESATYMDFLLNNARGG 115


>YPO2971 [S] COG4259 Uncharacterized protein conserved in bacteria Ype
           Yersinia pestis
          Length = 118

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 66/102 (64%), Gaps = 2/102 (1%)

Query: 17  TLSGCAKQQQKSLYGWGNYQDQLYEHFKTEGNGNETEIAALEENLQKMRANNDAVPPGYH 76
            L+GC     K +Y W NYQ  +YE++K+     E +IAAL+EN++K +A    VPPG H
Sbjct: 15  VLAGCV-TAPKPIYNWDNYQSTIYEYYKS-NETPEQQIAALKENIEKSQAKGLPVPPGLH 72

Query: 77  AHLGMLYAAVGKEDQLIQELQTEKALFPESAPYMDFLMRNYK 118
           AHLGMLYA  G  +  + E  TEKA FPESAP+MDFLM   K
Sbjct: 73  AHLGMLYANTGHPELAMAEFNTEKATFPESAPFMDFLMSKDK 114


>NMB1163 [S] COG4259 Uncharacterized protein conserved in bacteria Nme
           Neisseria meningitidis MC58
          Length = 123

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 9/125 (7%)

Query: 1   MMNKKLAAGFALGLA-LTLSGCAKQQQKSLYGWGNYQDQLYEHFKTEGNGNETEIAALEE 59
           MMN K  +  +L  A L L+ C    QKSLY +G Y D +YE  K +    +T +    E
Sbjct: 1   MMNPKTLSRLSLCAAVLALTACGGNGQKSLYYYGGYPDTVYEGLKND----DTSLGKQTE 56

Query: 60  NLQK--MRANNDAV--PPGYHAHLGMLYAAVGKEDQLIQELQTEKALFPESAPYMDFLMR 115
            ++K  + A N  +   PG HAHLG+L +  G ++   ++ + EK LFPES  +MDFLM+
Sbjct: 57  KMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRLFPESGVFMDFLMK 116

Query: 116 NYKKG 120
             K G
Sbjct: 117 TGKGG 121


>NMB1125 [S] COG4259 Uncharacterized protein conserved in bacteria Nme
           Neisseria meningitidis MC58
          Length = 123

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/125 (38%), Positives = 69/125 (55%), Gaps = 9/125 (7%)

Query: 1   MMNKKLAAGFALGLA-LTLSGCAKQQQKSLYGWGNYQDQLYEHFKTEGNGNETEIAALEE 59
           MMN K  +  +L  A L L+ C    QKSLY +G Y D +YE  K +    +T +    E
Sbjct: 1   MMNPKTLSRLSLCAAVLALTACGGNGQKSLYYYGGYPDTVYEGLKND----DTSLGKQTE 56

Query: 60  NLQK--MRANNDAV--PPGYHAHLGMLYAAVGKEDQLIQELQTEKALFPESAPYMDFLMR 115
            ++K  + A N  +   PG HAHLG+L +  G ++   ++ + EK LFPES  +MDFLM+
Sbjct: 57  KMEKYFVEAGNKKMNAAPGAHAHLGLLLSRSGDKEGAFRQFEEEKRLFPESGVFMDFLMK 116

Query: 116 NYKKG 120
             K G
Sbjct: 117 TGKGG 121