BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3308.p (441 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 493 e-139 PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae... 353 6e-97 RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso ... 298 1e-80 PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 293 4e-79 PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae P... 234 4e-61 >PA2266 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 439 Score = 493 bits (1269), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/406 (57%), Positives = 298/406 (73%), Gaps = 7/406 (1%) Query: 36 LVQRGEYLAKAGDCVACHTAKGGKPFAGGLPIATPVGTVYSSNITPDKENGIGNYSEEDF 95 LV++GEYLA+AGDCVACHTA+ GKPFAGGLP+ TP+G VYS+NITPD++ GIG+YS EDF Sbjct: 27 LVRQGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITPDRKTGIGDYSFEDF 86 Query: 96 DNALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMNGVQADPAPNRGVDITWPLS 155 D A+RHG+ + G +LYPAMPYPSYA+V AD++ALYAYFM+GV+ PN+ DI WPLS Sbjct: 87 DRAVRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWPLS 146 Query: 156 MRWPLSIWRKVFAPAVA-LDGPEDNSP-LVRGQYLVEGLGHCGACHTPRGVGMQEKALS- 212 MRWPL+ WR FAP V P L RG YLVEGLGHCGACHTPRG+GMQEKAL+ Sbjct: 147 MRWPLAFWRWTFAPEVKDFQAAAGQDPVLARGAYLVEGLGHCGACHTPRGLGMQEKALAA 206 Query: 213 NDSSLYLSGGV-IDGYLANNLRGDARDGLGNWSQADIVAFLKTGRNSHSAAFGGMADVVA 271 +D + YLSG ++ ++A +LRGD R GLG+WS+AD+V+FL+TGR+ SA FGGM+DVV Sbjct: 207 SDGAAYLSGSAPLENWIAKSLRGDHRTGLGSWSEADLVSFLRTGRSERSAVFGGMSDVVV 266 Query: 272 QSTQYLSEADLSAMATYLKSLKPVKEGTAALAYDDKTHQALRKGSDQSPGAMTFLNNCAA 331 S QY+++ADL+A+A YLKSL P YD+ QAL G D GA +++NC A Sbjct: 267 HSMQYMTDADLTAIARYLKSLPPADPADQPHVYDESVAQALFHGDDSKTGAALYVDNCGA 326 Query: 332 CHRSSGKGYEETFPTLALSPTVNADNPASLIRIVLEGAEMPWTHKAPTQFAMPGFASRLS 391 CHR+ GKGY FP LA +P V +P SL+ IVL+G +P TH+AP+ F MP F R++ Sbjct: 327 CHRTDGKGYARVFPALAGNPVVTGSDPTSLVHIVLKGGTLPATHQAPSSFTMPPFGWRMN 386 Query: 392 DQEVADVVTFIRSSWGNQAASVSASDVAKVRQQVPEKKTVEVGAVP 437 DQE+ADVV FIR+SWGNQA SVS +V ++R+ + VG +P Sbjct: 387 DQEIADVVNFIRTSWGNQAPSVSVDEVRRLRK---DTGAAAVGDIP 429 >PA4571_1 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 441 Score = 353 bits (905), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 180/402 (44%), Positives = 249/402 (61%), Gaps = 18/402 (4%) Query: 30 PSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLPIATPVGTVYSSNITPDKENGIGN 89 P+ D L+++G Y+A+ GDC+ACHT G P AGGL + TP+GT+YS+NITPD+E GIG Sbjct: 26 PTTDAALIEKGRYVAQLGDCIACHTGPQGAPMAGGLELKTPMGTIYSTNITPDRETGIGR 85 Query: 90 YSEEDFDNALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMNGVQADPAPNRGVD 149 YS E+FD A+R G+ +G +LYPAMPYPSYAK+ D++ALYAY M+GVQ N Sbjct: 86 YSFEEFDRAMRKGVTAEGVNLYPAMPYPSYAKISEEDMRALYAYLMHGVQPVTQANTPSA 145 Query: 150 ITWPLSMRWPLSIWRKVFAPAVALDGPEDNSPLV-RGQYLVEGLGHCGACHTPRGVGMQE 208 ++WP + RW LS+W F D P++ RG YLV+GLGHCGACHTPRG+ QE Sbjct: 146 MSWPFNQRWGLSLWNWAFLDDAPFTPSSDADPVINRGAYLVQGLGHCGACHTPRGIAFQE 205 Query: 209 KALSN---DSSLYLSGGVIDGYLANNLRGDARDGLGNWSQADIVAFLKTGRNSHSAAFGG 265 KA+S YL+G ++ + A +LR W+ D V LKTG+N + G Sbjct: 206 KAMSEAGRSGQFYLAGETVEQWQALSLR-------NLWTVEDTVQLLKTGQNRFATVSGS 258 Query: 266 MADVVAQSTQYLSEADLSAMATYLKSLKPVKEGTAALAYDDKTHQALRKGSD--QSPGAM 323 M DV+ STQ+ S+ DL A+A+YLKSL K+ L D + + L D S G + Sbjct: 259 MTDVIHHSTQHFSDDDLLAIASYLKSLPAGKDD---LPMPD-SERPLAAPVDLYSSRGGL 314 Query: 324 TFLNNCAACHRSSGKGYEETFPTLALSPTVNADNPASLIRIVLEGAEMPWTHKAPTQFAM 383 + C+ CHR G G FP LA +PTV + NP++L+ I L G + T + M Sbjct: 315 GYAQFCSDCHRKDGSGVPGMFPPLAGNPTVASANPSTLLHITLTGWKTAQTATHSRVYTM 374 Query: 384 PGFASRLSDQEVADVVTFIRSSWGNQAASVSASDVAKVRQQV 425 PGFA +L D+E+A++++F+RSSWGNQ +S+ A V K+RQ++ Sbjct: 375 PGFA-QLEDREIAEILSFVRSSWGNQGSSIDAGQVKKLRQRI 415 Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 75/199 (37%), Gaps = 33/199 (16%) Query: 167 FAPAVALDGPEDNSPLV-RGQYLVEGLGHCGACHTPRGVGMQEKALSNDSSLYLSGGVID 225 P + P ++ L+ +G+Y+ + LG C ACHT G Q ++ L G I Sbjct: 17 IVPLLHASEPTTDAALIEKGRYVAQ-LGDCIACHT----GPQGAPMAGGLELKTPMGTI- 70 Query: 226 GYLANNLRGDARDGLGNWSQADIVAFLKTGRNSHSAAFGGMADVVAQSTQYLSEADLSAM 285 + N+ D G+G +S + ++ G + + S +SE D+ A+ Sbjct: 71 --YSTNITPDRETGIGRYSFEEFDRAMRKGVTAEGVNL--YPAMPYPSYAKISEEDMRAL 126 Query: 286 ATYL-KSLKPVKEGTAALAYDDKTHQ---------------ALRKGSDQSP----GAMTF 325 YL ++PV + A +Q SD P GA Sbjct: 127 YAYLMHGVQPVTQANTPSAMSWPFNQRWGLSLWNWAFLDDAPFTPSSDADPVINRGAYLV 186 Query: 326 --LNNCAACHRSSGKGYEE 342 L +C ACH G ++E Sbjct: 187 QGLGHCGACHTPRGIAFQE 205 >RSc0772 [C] COG2010 Cytochrome c, mono- and diheme variants Rso Ralstonia solanacearum Length = 429 Score = 298 bits (764), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 168/398 (42%), Positives = 231/398 (58%), Gaps = 16/398 (4%) Query: 37 VQRGEYLAKAGDCVACHTAKGGKPFAGGLPIATP-VGTVYSSNITPDKENGIGNYSEEDF 95 ++RGEYLA AGDCVACHTA GGKPFAGGLP+ P +GT+YSSNITPD + GIG + EDF Sbjct: 33 IKRGEYLAIAGDCVACHTAPGGKPFAGGLPLQIPMLGTIYSSNITPDPKTGIGKWRYEDF 92 Query: 96 DNALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFMNGVQA-DPAPNRGVDITWPL 154 + A+R G+ DG +LYPAMPYPSYAK+ AD++ LYAYF GV A AP G I WPL Sbjct: 93 ERAVRQGVSDDGENLYPAMPYPSYAKINDADMRDLYAYFRYGVAAVQYAPPPGT-IRWPL 151 Query: 155 SMRWPLSIWRKVFAPAVALDGPEDNSPLV-RGQYLVEGLGHCGACHTPRGVGMQEKALSN 213 +MRWPL +W F D +P RG YL +GL HCG CHTPRG MQEKA+ Sbjct: 152 NMRWPLKLWNLAFLKRAPYLPKGDMTPTWNRGAYLAQGLAHCGTCHTPRGFAMQEKAMDE 211 Query: 214 DSSLYLSGGVIDGYLANNLRGDARDGLGNWSQADIVAFLKTGR-NSHSAAFGGMADVVAQ 272 YL+G + G+ A N+ D G+G W IV +L+TG A G M + V Sbjct: 212 RGKGYLAGSTLAGWSAYNITSDPVSGIGGWKPEQIVQYLRTGSVPGIGQAAGPMGEAVQH 271 Query: 273 STQYLSEADLSAMATYLKSLKPVKEGTAALAYDDKTHQ----ALRKGSDQSP--GAMTFL 326 S ++E D+ A+A YL+++ V G + T ALR ++ A +L Sbjct: 272 SFSRMTERDVRAIAEYLRTVPAVSTGAQRARHGWGTPATDVIALRGKPIETTIDAARLYL 331 Query: 327 NNCAACHRSSGKGYEE-TFPTLALSPTVNADNPASLIRIVLEGAEMPWTHKAPTQFAMPG 385 NCA CH++ G+G + +P L + V A + +L++++L G E MP Sbjct: 332 GNCATCHQADGRGTPDGYYPPLLHNSAVGARDTRNLVQVMLHGIE---RRAGDRHIGMPA 388 Query: 386 FASRLSDQEVADVVTFIRSSWGNQAA-SVSASDVAKVR 422 F +LSD ++A + ++ +G+ A +++A ++AK R Sbjct: 389 FGRQLSDAQLAALANYVTRQFGDPATPALTADEIAKRR 426 >PA4619 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 415 Score = 293 bits (751), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 168/404 (41%), Positives = 239/404 (59%), Gaps = 24/404 (5%) Query: 36 LVQRGEYLAKAGDCVACHTAKGGKPFAGGLPIATPVGTVYSSNITPDKENGIGNYSEEDF 95 LV+RGEYLA+A DC+ACHTA+GG PFAGGLPI +P GT+Y +NITPDKE+GIG YS ++F Sbjct: 29 LVKRGEYLARAADCMACHTAEGGAPFAGGLPIQSPFGTIYGTNITPDKEHGIGAYSADEF 88 Query: 96 DNALRHGIRKDGASLYPAMPYPSYAKVKPADVKALYAYFM-NGVQADPAPNRGVDITWPL 154 AL G RKDGA LYPAMPY SY ++ D A+YAY M A PAP +++P Sbjct: 89 FAALTEGKRKDGAYLYPAMPYTSYHLIEREDADAIYAYLMAQEPIARPAPQ--TSLSFPF 146 Query: 155 SMRWPLSIWRKVFAPAVALDGPEDNSP-LVRGQYLVEGLGHCGACHTPRGVGMQEKALSN 213 ++R L+ W ++ +V L E S RGQY+VE LGHCG CHTPR + AL Sbjct: 147 NVRMGLAGWNLLYGKSVRLQPEEGRSEAWKRGQYMVEVLGHCGECHTPRNLA---GALEQ 203 Query: 214 DSSLYLSGGVIDGYLANNLR-GD--ARDGLGNWSQADIVAFLKTGRNSHSAAFGGMADVV 270 D LSGG+++GYLA +L GD AR W+Q D+ +FLK G ++ + F M VV Sbjct: 204 DKR--LSGGLLNGYLAPSLLPGDLAAR----GWTQPDLASFLKHGMSAQGSMFNEMFPVV 257 Query: 271 AQSTQYLSEADLSAMATYLKSLKPVKEGTAALAYDDKTHQALRKGSDQSPGAMTFLNNCA 330 STQ+L + DL+AMATYL +P + + + + ++G Q +LN CA Sbjct: 258 HHSTQHLDDGDLAAMATYLLGDQPPPAKVVQALPEAQLNDSGKRGRQQ------YLNVCA 311 Query: 331 ACHRSSGKGYEETFPTLALSPTVNADNPASLIRIVLEG-AEMPWTHKAPTQFAMPGFASR 389 CH G+G + + T+ +P +L+R++ +G E +T Q MPGFA + Sbjct: 312 GCHGGEGEGKPHIAVAMNGNTTLRLQDPRNLLRVIEDGIVEQQFTGFERMQ-PMPGFAGK 370 Query: 390 LSDQEVADVVTFIRSSWGNQAASVSASDVAKVRQQVPEKKTVEV 433 L D+++ D++ ++R +WG + VA+++ + TV+V Sbjct: 371 LDDEQLTDLLNYLRQTWGGLPGDLGPQQVAQLKMESASAHTVKV 414 >PA1600 [C] COG2010 Cytochrome c, mono- and diheme variants Pae Pseudomonas aeruginosa Length = 433 Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 157/431 (36%), Positives = 225/431 (52%), Gaps = 29/431 (6%) Query: 7 IAACAAVMSLSAFTAAAQSNPAAPSADQQLVQRGEYLAKAGDCVACHTAKGGKPFAGGLP 66 +AA A + A + P SA+Q + RGE LA GDC CHT +GG AGG Sbjct: 18 LAAIALGYAWQPAIAPLEGTPGPFSAEQ--IARGERLAALGDCAVCHTREGGPRNAGGRA 75 Query: 67 IATPVGTVYSSNITPDKENGIGNYSEEDFDNALRHGIRKDGASLYPAMPYPSYAKVKPAD 126 + TP GT+YSSN+TPD+ +GIG +S F+ A+RHG+ +DG+ LYPA PY ++ + + D Sbjct: 76 LPTPFGTIYSSNLTPDRASGIGGWSYPAFERAMRHGVARDGSYLYPAFPYTAFTRTRDED 135 Query: 127 VKALYAYFMN--GVQADPAPNRGVDITWPLSMRWPLSIWRKVFA-PAVALDGPEDNSPLV 183 +KALYAY M+ V ++ N+ + +P R ++ W +F P D P N Sbjct: 136 LKALYAYLMSQPAVHSETPANQ---LPFPFDQRQLMAGWNLLFLDPGAYRDEPTRNQQWN 192 Query: 184 RGQYLVEGLGHCGACHTPRGVGMQEKALSNDSSLYLSGGVIDGYLANNLRGDARDGLGNW 243 RG YL EGLGHC ACH+PR EK+ S + +GG +G+ A L + + W Sbjct: 193 RGAYLAEGLGHCSACHSPRNALGAEKS----GSAHFAGGEAEGWTAPALNASSPAPIA-W 247 Query: 244 SQADIVAFLKTGRNS-HSAAFGGMADVVAQSTQYLSEADLSAMATYLKSLKPVKEGTAAL 302 S+ + A+L+ G ++ H A G MA VV + + DL A+A YL S G Sbjct: 248 SEEALYAYLRHGYSAYHGVASGPMAPVVGEGLAKQPDEDLRALAHYLASYAAAPAGET-- 305 Query: 303 AYDDKTHQALRK---GSDQSP---GAMTFLNNCAACHR-SSGKGYEETFPTLALSPTVNA 355 D + Q L + G Q P GA F C ACH G + P+LAL+ V+A Sbjct: 306 --DQQQAQRLDRQGYGRVQPPSGSGARLFAGACLACHHDGDGPRFFGVRPSLALNSNVHA 363 Query: 356 DNPASLIRIVLEGAEMPWTHKAPTQFAMPGFASRLSDQEVADVVTFIRSSW-GNQAASVS 414 D+P +L+RI+L+G P T MPGF L D++VA + ++R + G A Sbjct: 364 DSPDNLLRIILDGIHSPATGDLGY---MPGFRHSLDDRQVATLANYLRERFAGKPAWPDL 420 Query: 415 ASDVAKVRQQV 425 A+ A +R+Q Sbjct: 421 AAKAASLRRQA 431