BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3307.p (1069 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0175_1 [S] COG3501 Uncharacterized protein conserved in bacte... 422 e-117 RSp0768_1 [S] COG3501 Uncharacterized protein conserved in bacte... 337 7e-92 RSp0768_2 Non COG 289 2e-77 RSp0738_1 [S] COG3501 Uncharacterized protein conserved in bacte... 239 2e-62 RSp0175_2 Non COG 211 1e-53 >RSp0175_1 [S] COG3501 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 649 Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust. Identities = 265/655 (40%), Positives = 373/655 (56%), Gaps = 25/655 (3%) Query: 5 SSLLSRLVRFSADSRLFRLQIAGHAEDRFLLQAYVSSEQLHGVDASELIVLSLDAECPLK 64 +LL L F+ RL+ L+ G + ++A++ E L + ++ S +A L+ Sbjct: 4 KTLLQHL--FAPAHRLYALEGEGPIAE-LAVEAWLGREALSELFEWRVVAASANARFALE 60 Query: 65 SLIGCHATLETRLADGTRSRRTGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVW 124 S IG TL T LADGT++RRTGLI +A +LG DG RYRL +VPW WL Q R S+V+ Sbjct: 61 SFIGQRVTLVTTLADGTQARRTGLIRQAEQLGADGSLARYRLTVVPWFWLATQQRHSQVF 120 Query: 125 QDKSLLDVVEDVLRDFPQHADWTWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEG 184 Q++ L D++E VL + +A W ++A A D + RS+ Q+R+T F++RLLA G Sbjct: 121 QNRPLADILEQVLSPYAPYAAWRFAAGAEDRMAAFGTRSHIAQFRETDYRFVTRLLAEAG 180 Query: 185 MSWRVEEHAASPQGHRLVFFGDSSQRSALAEDVTSAADGGIRFHGARAQEQQDSIQALAA 244 + + E +P GH L+ F DS + LAED SAA+GGIR+H A +QE++D+IQAL Sbjct: 181 LGFTTVEDEQAPSGHALLIFADSPR---LAEDTASAAEGGIRYHRAHSQEERDAIQALIC 237 Query: 245 CRSLQAASYTLLGYDDQNKQAIAASIPTHHAFGGRSAPRLESYDSAGLNAPDDSQAADRH 304 + +D Q K+A A +P+ G +P ++Y S + D+ A R Sbjct: 238 HSRTAVGGVAVAAWDAQAKRAFRAHVPSRFC-GIAGSP--DAYLSISPSLAPDTANAQRI 294 Query: 305 ARLMMEAAEALNKRWRGRSTVRSLRAGSRFTLMGGP-LREQHQGQQEYAVLALLGVGINQ 363 A +ME+ EA + + GR +VR+LR+G+R ++ P L + G + + GIN Sbjct: 295 AEQVMESVEARARLFIGRGSVRTLRSGTRLKIVDCPHLPKDVDGPYPLLIDLVEHCGINN 354 Query: 364 LPADTEASLAELFGPLPPLLEEAIAACLQTQP------LHPDWPLAR---TDTLIEQARS 414 L ADT+A+LA G L L + P + R T L+ AR+ Sbjct: 355 LTADTQATLARKLGGLDAALTFDTPPSPPESGPGPFGFMAPHEVIERFTPTADLLTAARA 414 Query: 415 MGYANVFEAIRADIPWRPVLADGSGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCD 474 GYA F A A PWRPV++ + ARG QSAIVVG GET+A+G E Sbjct: 415 HGYAGQFRAGDARRPWRPVVSHPDTGRLYAEPTARGVQSAIVVGPNGETEASGDAEHHTT 474 Query: 475 RLGRVRIRFHW-QGRHDDAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERP 533 G+VR+RF W QG D +T W+ V QR AG GMG Q+LPRIGQEVLV+F E+D+++P Sbjct: 475 PRGQVRVRFPWQQGERPDDRSTGWLLVAQRQAGAGMGWQWLPRIGQEVLVKFQEDDIDQP 534 Query: 534 IILGALYNGRGEGSVIPTPGGEV-----KDCSSMEVFAMASDTGISGQGNLAGTQAPTWH 588 +++GALYNG+GE + PTPGG+V ++ ++ + SD+ S QGNLA +P WH Sbjct: 535 VVIGALYNGQGEAGIAPTPGGQVAKGVRQEADPETLYRLGSDSAASAQGNLAAGHSPAWH 594 Query: 589 GASADRDGHRNPAAQWGIRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNL 643 G + +GHRN AA G +S E GG G N L+FDDSDGQ R Q TTQA S+LNL Sbjct: 595 GLGTEAEGHRNAAALSGFKSAEHGGRGANLLVFDDSDGQLRTQLATTQAYSQLNL 649 >RSp0768_1 [S] COG3501 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 554 Score = 337 bits (865), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 217/560 (38%), Positives = 315/560 (56%), Gaps = 20/560 (3%) Query: 5 SSLLSRLVRFSADSRLFRLQIAGHAEDRFLLQAYVSSEQLHGVDASELIVLSLDAECPLK 64 ++LL L F+ RL+ L+ G + ++A++ E L + ++ S +A L+ Sbjct: 4 TTLLQNL--FAPAHRLYALEGEGPIAE-LAVEAWLGREALSELFEWRVVAASANARFALE 60 Query: 65 SLIGCHATLETRLADGTRSRRTGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVW 124 S IG TL T LADGT++RRTGLI +A +LG DG RYRL +VPW WL Q R S+V+ Sbjct: 61 SFIGQRVTLVTTLADGTQARRTGLIRQAEQLGADGSLARYRLTVVPWFWLATQQRHSQVF 120 Query: 125 QDKSLLDVVEDVLRDFPQHADWTWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEG 184 Q++ L D++E VL + +A W ++A A D + RS+ Q+R+T F++RLLA G Sbjct: 121 QNRPLADILEQVLSPYAPYAAWRFAAGAEDRMAAFGTRSHIAQFRETDYRFVTRLLAEAG 180 Query: 185 MSWRVEEHAASPQGHRLVFFGDSSQRSALAEDVTSAADGGIRFHGARAQEQQDSIQALAA 244 + + E +P GH L+ F DS + LAED SAA+GGIR+H A +QE++D+IQAL Sbjct: 181 LGFTTVEDEQAPSGHALLIFADSPR---LAEDTASAAEGGIRYHRAHSQEERDAIQALIC 237 Query: 245 CRSLQAASYTLLGYDDQNKQAIAASIPTHHAFGGRSAPRLESYDSAGLNAPDDSQAADRH 304 + +D Q K+A A +P+ G +P ++Y S + D+ A R Sbjct: 238 HSRTAVGGVAVAAWDAQAKRAFRAHVPSRFC-GIAGSP--DAYLSISPSLAPDTANAQRI 294 Query: 305 ARLMMEAAEALNKRWRGRSTVRSLRAGSRFTLMGGP-LREQHQGQQEYAVLALLGVGINQ 363 A +ME+ EA + + GR +VR+LR+G+R ++ P L + G + + GIN Sbjct: 295 AEQVMESVEARARLFIGRGSVRTLRSGTRLKIVDCPHLPKDVDGPYPLLIDLVEHCGINN 354 Query: 364 LPADTEASLAELFGPLPPLLEEAIAACLQTQP------LHPDWPLAR---TDTLIEQARS 414 L ADT+A+LA G L L + P + R T L+ AR+ Sbjct: 355 LTADTQATLARKLGGLDAALTFDTPPSPPESGPGPFGFMAPHEVIERFTPTADLLTAARA 414 Query: 415 MGYANVFEAIRADIPWRPVLADGSGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCD 474 GYA F A A PWRPV++ + A+G +AIVVG GET+A+G E Sbjct: 415 HGYAGQFRAGDARRPWRPVVSHPDTGRLYAEPTAKGVHTAIVVGPNGETEASGDAEHHTT 474 Query: 475 RLGRVRIRFHW-QGRHDDAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERP 533 G+VR+RF W QG D +T W+ V QR AG GMG Q+LPRIGQEVLV+F E+D+++P Sbjct: 475 PRGQVRVRFPWQQGERPDDRSTGWLLVAQRQAGAGMGWQWLPRIGQEVLVKFQEDDIDQP 534 Query: 534 IILGALYNGRGEGSVIPTPG 553 +++GALYNG+GE + PTPG Sbjct: 535 VVIGALYNGQGEAGIAPTPG 554 >RSp0768_2 Non COG Length = 452 Score = 289 bits (740), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 166/376 (44%), Positives = 219/376 (58%), Gaps = 20/376 (5%) Query: 564 VFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRNPAAQWGIRSKEFGGWGYNQLLFDD 623 ++ + SD+ S QGNLA +P WHG + +GHRN AA G +S E GG G N L+FDD Sbjct: 16 LYRLGSDSAASAQGNLAAGHSPAWHGLGTEAEGHRNAAALSGFKSAEHGGRGANLLVFDD 75 Query: 624 SDGQGRLQFKTTQAGSELNLGHLIHSADNYRGSFRGTGLELRTDAYGVIRAGAGILFSSY 683 SDGQ R Q TTQA S+LNLGHLIH DN RGSFRG G ELRTD YG +R AG+L ++Y Sbjct: 76 SDGQLRTQLATTQAYSQLNLGHLIHQQDNRRGSFRGQGFELRTDGYGAVRGHAGVLLTTY 135 Query: 684 RVEHRAHHRDPAADNTGLRAMARQAAHISKSFDEAARTHRTVGMSQGLD----------- 732 R + + P DN A+ RQA ++ S + A TH+T +S D Sbjct: 136 R-DATSGKAVPTGDNAAGIALIRQAKQLTSSLSQGATTHQTAALSTAKDDSAPLAQQEKA 194 Query: 733 --------AMNAMKQAVASQAEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGSSV 784 A++A +Q A+ +P S +Q+A + GL +AGQ LQ A+G S+ Sbjct: 195 ASGMVDGKALDAARQDAAAGNTTTQGKVPHQSDATVQLAGRAGLVAIAGQDLQFASGESI 254 Query: 785 SLMAGQDAQHISGHQFRLRTQQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQADGMSV 844 +L +GQD G Q RL Q IG+ AG S AGD IGLQ+ A Q ++ VQAQ D + + Sbjct: 255 ALASGQDTNVAVGKQARLHAGQGIGVAAGLSKAGDDNIGLQLTAGQDNLDVQAQHDALGL 314 Query: 845 QARDQLTLVSANAAVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQVWLDGP 904 ++D L LVSAN V++AAAK+I L+TA GA+IT+EGGNI V+ PG +T A Q GP Sbjct: 315 LSKDDLKLVSANLHVDFAAAKRIRLATAAGASITLEGGNIIVETPGRITYKAAQRSFAGP 374 Query: 905 VRHLVQLPALPRTAVD 920 +L +A D Sbjct: 375 THASRELNTWSHSAFD 390 >RSp0738_1 [S] COG3501 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 609 Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 213/679 (31%), Positives = 306/679 (45%), Gaps = 147/679 (21%) Query: 31 DRFLLQAYVSSEQLHGVDASELIVLSLDAECPLKSLIGCH-----ATLETRLADGTRSRR 85 D +++ + + E + S VL +D PL +L ATL LADG+R Sbjct: 36 DNLVVERFTAREAV-----SASCVLQVDCLSPLANLDTAQLASQEATLRLMLADGSRRAW 90 Query: 86 TGLIHEAAKLGGDGGFCRYRLRMVPWPWLLGQSRTSRVWQDKSLLDVVEDVLRDFPQHAD 145 G + + A LGG+GG RYRLR+ PW L R V+QDK+ L+++ED+ D+P Sbjct: 91 HGYVTDCAALGGNGGLARYRLRIGPWLDRLHTRRDCFVYQDKTALEIIEDLFADYPV--- 147 Query: 146 WTWSADALDVLTRLPLRSYTVQYRQTHLDFISRLLAGEGMSWRVEEH-------AASPQG 198 + L V RS QYR+T DF+ RLLA EG+S R+E ++ Sbjct: 148 ---AHYKLAVSQPCAKRSICCQYRETDYDFVMRLLAEEGLSLRIEHEQGDARRDGSAQSR 204 Query: 199 HRLVFFGDSSQRSALAEDVTSAADGGIRFHGARAQEQQDSIQALAACRSLQAASYTLLGY 258 H +V F + ++R A A+ IRFH A E++D+I+ + R++ + T+ + Sbjct: 205 HCVVIFDNDAERPACAQP-------DIRFHRVDATEREDAIERFSQMRTVGTNAVTVSSW 257 Query: 259 DDQNKQAIAASIPTHHAFGGRSAPRLESYDSAGLNAPDDSQAADRHARLMMEAAEALNKR 318 + K A + + G P LE++++AG D+Q A R ARL M+A E R Sbjct: 258 N--YKALAATAAQASASDPGGELPALEAFEAAGPYRFADAQGAGRAARLRMQAHEGAYLR 315 Query: 319 WRGRSTVRSLRAGSRFTLMGGPLREQH--QGQQEYAVLALLGVGINQLPADTEASLAELF 376 + G+ +VR L G RFTL QH ++ L++ N L AD LA L Sbjct: 316 YLGQGSVRQLGPGQRFTLT------QHFDTRHSQFVTLSVEHEAANNLGAD----LARLL 365 Query: 377 GPLPPLLEEAIAACLQTQPLHPDWPLARTDTLIEQARSMGYANVFEAIRADIPWRPVLAD 436 G T IE R Y N F A+ A+ P P Sbjct: 366 G----------------------------TTDIESGR---YRNRFVAVPAEAPIVPP--- 391 Query: 437 GSGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCDRLGRVRIRFHW----------- 485 + RP A Q+A V+ A+ + DR RVRIRF W Sbjct: 392 ---YRHRP--TAPEGQAATVI-------ADDGAPLTTDRDHRVRIRFPWLRAPALNAFAE 439 Query: 486 QGRHDDAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILGALYNGRGE 545 D + T WVRV AGP G LPR G +VL+ F++ D++RP++ L+N E Sbjct: 440 PAGSDRSQVTAWVRVATASAGPNWGAHHLPRAGTQVLLTFVDGDIDRPLVTMQLHN---E 496 Query: 546 GSVIPTPGGEVKDCSSMEVFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRNPAAQWG 605 +P P A+D + GQ L+G WH Sbjct: 497 QDALPWP---------------AADAPL-GQA-LSG-----WH----------------- 517 Query: 606 IRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNLGHLIHSADN--YRGSFRGTGLE 663 S GG GYNQ + DD Q R++ ++ AGS+LNLG+++ RG +RGTG E Sbjct: 518 --SPSLGGDGYNQWVVDDHPAQLRMRLASSTAGSQLNLGYVVSHGPTGGERGDWRGTGAE 575 Query: 664 LRTDAYGVIRAGAGILFSS 682 LRTDA+ V+RAG G+L S+ Sbjct: 576 LRTDAWAVVRAGGGLLLST 594 >RSp0175_2 Non COG Length = 313 Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/292 (42%), Positives = 165/292 (56%), Gaps = 20/292 (6%) Query: 644 GHLIHSADNYRGSFRGTGLELRTDAYGVIRAGAGILFSSYRVEHRAHHRDPAADNTGLRA 703 GHLIH DN RGSFRG G ELRTD YG +R AG+L ++YR + + P DN A Sbjct: 1 GHLIHQQDNRRGSFRGQGFELRTDGYGAVRGQAGVLLTTYR-DATSGKAVPTGDNAAGIA 59 Query: 704 MARQAAHISKSFDEAARTHRTVGMSQGLDAMNAM-KQAVASQAEIAGQ------------ 750 + RQA ++ S + A TH+T +S D + KQ A+ + G+ Sbjct: 60 LIRQAKQLTASLSQGATTHQTAALSTAKDDSAPLAKQEKAASGMVDGKALDAAQQDAAAG 119 Query: 751 ------TLPGSSTPLIQIAAKEGLGVVAGQHLQLANGSSVSLMAGQDAQHISGHQFRLRT 804 +P S +Q+A + GL +AGQ LQ ANG SV L +GQD G Q R+ Sbjct: 120 NTATQGKVPHQSEATVQLAGRAGLVAIAGQDLQFANGESVVLASGQDTNVAVGKQARIHA 179 Query: 805 QQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQADGMSVQARDQLTLVSANAAVNWAAA 864 Q IG+ AG S AGD IGLQ+ A Q ++ VQAQ D + + ++D L LVSAN V++AAA Sbjct: 180 GQGIGVAAGLSKAGDDNIGLQLTAGQDNLDVQAQHDALGLLSKDDLKLVSANLHVDFAAA 239 Query: 865 KKISLSTAGGANITIEGGNITVQCPGELTVHAGQVWLDGPVRHLVQLPALPR 916 K+I L+TA GA+IT+EGGNI V+ PG +T A Q GPV LP P+ Sbjct: 240 KRIRLATAAGASITLEGGNIIVETPGRITYKAAQRSFAGPVTQSYPLPVFPQ 291