BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3303.p (293 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMb20658 [G] COG0395 ABC-type sugar transport system, permease c... 428 e-120 SMa0711 [G] COG0395 ABC-type sugar transport system, permease co... 177 4e-44 lin2970 [G] COG0395 ABC-type sugar transport system, permease co... 165 1e-40 AGpA680 [G] COG0395 ABC-type sugar transport system, permease co... 165 1e-40 mlr7227 [G] COG0395 ABC-type sugar transport system, permease co... 161 1e-39 >SMb20658 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 299 Score = 428 bits (1100), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/294 (72%), Positives = 248/294 (84%), Gaps = 4/294 (1%) Query: 4 KKDDQMET---QGMDFLQSTPRKWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQT 60 + DD++ T +GM +L PR+ V +Y+P+ +F+FVLLFPFYWM ITA KP+ +L Sbjct: 6 RTDDEVLTDTAEGMSYLNRLPRRIVVLYLPMAVFVFVLLFPFYWMAITAVKPNAQLTDYN 65 Query: 61 G-NPFWVVAPTLAHFKKLLFDTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQG 119 +PFWVV PTL H K LLF+T YP WL NT++V+V ST SLAASVFAAYAIER+RF G Sbjct: 66 NYSPFWVVRPTLDHIKYLLFETSYPGWLWNTMLVAVGSTILSLAASVFAAYAIERVRFTG 125 Query: 120 SKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFR 179 ++ VGL IFLAYL+PPSILFIPLA IVFK G++D++ ALI TYPTFLIPFCTWLLMGYFR Sbjct: 126 ARPVGLLIFLAYLVPPSILFIPLAFIVFKFGIYDSKLALIFTYPTFLIPFCTWLLMGYFR 185 Query: 180 SIPYELEECALIDGATRWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEV 239 SIP+ELEE AL+DGATRW+ILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFI SSE Sbjct: 186 SIPFELEESALVDGATRWQILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFIQSSEN 245 Query: 240 KTVPVGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 KTVPVG++TELV GDV+ WGALMAGAL GSLPV ++YSFFV+YYVS MTGAVKE Sbjct: 246 KTVPVGVLTELVRGDVFEWGALMAGALFGSLPVVILYSFFVDYYVSSMTGAVKE 299 >SMa0711 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 276 Score = 177 bits (448), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 98/279 (35%), Positives = 162/279 (58%), Gaps = 5/279 (1%) Query: 17 LQSTPRKWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPFWVVAPTLAHFKK 76 +Q T + +++Y L + VLLFP YW+ +TA E+ Q FW P + F K Sbjct: 1 MQRTTLQTLSLYAGLAVVCGVLLFPIYWLFVTALSTLAEI-RQLPPSFWPAEPQWSTFAK 59 Query: 77 LLFDTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPS 136 + + WL N+ + ++ S S+ SVFA Y++ R +G + +GL I A ++P + Sbjct: 60 VGTERPIFLWLWNSTLAALGSVALSMVVSVFAGYSLSRFSVKGGRSLGLFILTAKMLPAT 119 Query: 137 ILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATR 196 +L IPL I +GL + W+L+L + T +IPF TW+L GYF +IP ELE+ A++DG + Sbjct: 120 LLVIPLFGIFRSMGLIGSLWSLVLAHATLIIPFTTWMLKGYFDTIPRELEQAAMVDGCSP 179 Query: 197 WEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVK-TVPVGIVTELVDGD- 254 L +++LP+A PGL + ++AF LSW ++ YA TF+++++ T +GI T + G+ Sbjct: 180 LGALFRVVLPVATPGLAATALYAFVLSWADYAYARTFLTNAQGSWTANLGITT--MKGEY 237 Query: 255 VYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 V W + A A+ +LP+ ++Y F Y V G+T ++ Sbjct: 238 VTDWNEISAAAVFIALPIILIYLFLERYLVGGLTAGAEK 276 >lin2970 [G] COG0395 ABC-type sugar transport system, permease component Lin Listeria innocua Length = 283 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/271 (33%), Positives = 161/271 (59%), Gaps = 5/271 (1%) Query: 25 VTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPFWVVAPTLAHFKKLLFDTQYP 84 + Y+ ++ FL + LFPF M++T+FK E +S T F+ T H+ + +P Sbjct: 14 IAFYVTMVAFLCITLFPFAIMLMTSFKSSKEAIS-THPTFFPKDFTFQHYIDIFNPDIFP 72 Query: 85 --AWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPL 142 + N+++VSV + ++ + AYA+ +LRF+G + + Y+ +L +PL Sbjct: 73 FLTYFKNSLVVSVFAAGIAVVLGILGAYALSKLRFKGRMTINASFYTVYMFSGILLIVPL 132 Query: 143 AAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILVK 202 I+ LGL+DT ALI+T +P ++L YF +IP ++EE A++DG R++I+++ Sbjct: 133 FKIISSLGLYDTETALIITMVVQTLPTAVFMLKSYFDTIPTDIEEAAMMDGLNRFQIILR 192 Query: 203 IILPLAVPGLISAGIFAFTLSWNEFIYALTFISSSEVKTVPVGIVTELVDGDVYHWGALM 262 II+PLA+ G++S ++ F ++WN++++A F+SSSE T+P+G+ T D Y WG +M Sbjct: 193 IIVPLAISGIVSVFVYCFMVAWNDYLFASIFLSSSEKFTLPIGLNTLFSTPD-YIWGRMM 251 Query: 263 AGALLGSLPVAVVYSFFVEYYVSGMT-GAVK 292 A +L+ +LPV ++Y+ + +T G VK Sbjct: 252 AASLVTALPVVIMYAISERFIKGNLTDGGVK 282 >AGpA680 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 277 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 160/280 (57%), Gaps = 10/280 (3%) Query: 16 FLQSTPRKWVTIYIPLLIFLFVLLFPFYWMVITAFKPDNELLSQTGNPFWVVAPTLAHFK 75 FLQS + +Y ++ L ++LFP YW+++TA +EL + FW P F Sbjct: 6 FLQS-----LALYATVIFTLVMVLFPVYWLLVTALSTTDELY-RLPPTFWPDDPQWDIFA 59 Query: 76 KLLFDTQYPAWLLNTVIVSVVSTFASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPP 135 ++ WL N+++ ++ S S+ SV A YA+ R +G +GL + A ++P Sbjct: 60 RVWAAKPILLWLWNSMLAAIGSVALSMLVSVSAGYALSRYSMRGGATMGLFVLTAKMLPA 119 Query: 136 SILFIPLAAIVFKLGLFDTRWALILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGAT 195 ++L IPL +I GL + W L+L + T +IPF TW+L GYF +IP ELE+ A++DG + Sbjct: 120 TLLVIPLFSIFSSFGLIGSLWTLVLAHSTMIIPFATWMLKGYFDTIPKELEQAAMVDGCS 179 Query: 196 RWEILVKIILPLAVPGLISAGIFAFTLSWNEFIYALTF-ISSSEVKTVPVGIVTELVDGD 254 +V+++LP+A PGL + ++AF LSW ++ YA TF ++S + T +GI T + G+ Sbjct: 180 PIGAMVRVVLPIATPGLAATALYAFVLSWADYAYARTFLVNSPDNWTANLGITT--MQGE 237 Query: 255 -VYHWGALMAGALLGSLPVAVVYSFFVEYYVSGMTGAVKE 293 V +W + A ++ +LP+ +Y F Y V G+T ++ Sbjct: 238 YVTYWNDISAASVFIALPIIAIYLFLERYLVGGLTAGAEK 277 >mlr7227 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 280 Score = 161 bits (408), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 146/255 (57%), Gaps = 7/255 (2%) Query: 41 PFYWMVITAFKPDNEL--LSQTGNPFWVVAPTLAHFKKLLFDTQYPAWLLNTVIVSVVST 98 P YWM+ ++FK + E+ L T P A TL + +L D + N+ V+ T Sbjct: 30 PIYWMLSSSFKSNTEIFALPPTILP---KAFTLEAYAAILGDPVKLRFFFNSYFVAGTVT 86 Query: 99 FASLAASVFAAYAIERLRFQGSKQVGLGIFLAYLIPPSILFIPLAAIVFKLGLFDTRWAL 158 ++ ++ AAY R F+G + I IPP L IP +V G+FDT AL Sbjct: 87 VLTVLIALLAAYGFSRFNFRGKGSLNTLIISTQTIPPITLLIPFFGLVVSYGIFDTYVAL 146 Query: 159 ILTYPTFLIPFCTWLLMGYFRSIPYELEECALIDGATRWEILVKIILPLAVPGLISAGIF 218 ILTY F +P+ L+ GY ++P +L+E +DG T W L ++I+P+++PG+++ ++ Sbjct: 147 ILTYLVFTLPYAILLMTGYLNTLPRDLDEAVAVDGGTSWTALWRVIVPISLPGIVATSVY 206 Query: 219 AFTLSWNEFIYALTFISSSEVKTVPVGIVTELVDGDVYHWGALMAGALLGSLPVAVVYSF 278 F L WNEF++ALT S+ ++TVP+GI L+ + W +MA ++LGSLP+ ++Y Sbjct: 207 TFLLCWNEFLFALTLTKSTSMRTVPIGI-QLLMGQHAFEWNQMMAMSVLGSLPLLLIYLV 265 Query: 279 FVEYYVSGMT-GAVK 292 Y+++GMT G+VK Sbjct: 266 AQRYFLAGMTAGSVK 280