BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3288.p (215 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aer... 78 2e-14 SMc03169 [K] COG1309 Transcriptional regulator Sme Sinorhizobium... 72 1e-12 mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium ... 56 7e-08 RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia sola... 54 3e-07 BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella mel... 52 1e-06 >PA3678 [K] COG1309 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 212 Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 12/202 (5%) Query: 15 PGRPRNPESRARLLDAGRMLILKQGLD-FNIESIAVNAGVARRTFYSYFEDKEAFVAELL 73 PGRP++P R +L+A + L L G D ++E+IA AGV++ T YS+F DKE +E + Sbjct: 10 PGRPKDPAKREAILEAAKRLFLCNGYDGSSMEAIASEAGVSKLTVYSHFTDKETLFSEAV 69 Query: 74 RDAETAIGTADDELAGILEK-----PLADALYELGIRYLEGINQRKEFRWARLLASANKT 128 + ++L + + PL L + + IN + RL+A+ Sbjct: 70 K------AKCAEQLPALYFQLAEGAPLEKVLLNIARGFHRLINSHEAIALTRLMAAQAGQ 123 Query: 129 YPRLVERMFHEARCREHALLTRIVEQAMASGRLISCDPAQAAGDIVGLWHGVAVWQIATC 188 P+L E F + + R++EQA SG+L D AA L G A +++ Sbjct: 124 NPKLSELFFEAGPKQVIDEMERLLEQARRSGKLAFPDARHAAEHFFMLVKGCANYRLLIG 183 Query: 189 SLPTLSHDEIDRRVRRGVHLFL 210 L E +R V V LFL Sbjct: 184 CAEPLDEAEGERHVEEVVALFL 205 >SMc03169 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 236 Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 16/218 (7%) Query: 3 QVHSEPGAARRRPGRPRNPESRARLLDAGRMLILKQGLDF-NIESIAVNAGVARRTFYSY 61 Q + G R G +P R R+LD + + ++ D ++ I AGV++ T Y Y Sbjct: 21 QQENPSGGGRHAAGE--DPVKRERILDGAKRVFMRSSFDAASMNDITREAGVSKGTLYVY 78 Query: 62 FEDKE-AFVAELLRDAETAIGTADDELAGILEKPLADALYELGIRYLEGINQRKEFRWAR 120 FE+KE F A + R+ + + L G +P+ +AL+ G++ + I R R Sbjct: 79 FENKEDLFTALIARERNIIVNSVKQSLNG--NEPIEEALHAFGVKLVTSITSDYTIRAMR 136 Query: 121 LLASANKTYPRLVERMFHEARCREHALLTRIVEQAMASGRLISCDPAQAAGDIV-----G 175 + PRL +R F + +L ++Q +++G L D AA + G Sbjct: 137 TVLGVIDRMPRLAQRFFTATPENGYTVLKAYLDQQVSAGMLSIEDTEIAAKQFIDLAMAG 196 Query: 176 LWHGVAVWQIATCSLPTLSHDEIDRRVRRGVHLFLCIY 213 ++ G C +S + I++ VR + +FL Y Sbjct: 197 MFKG---RLFGMCD--AVSAESIEKNVRSAIRVFLAAY 229 >mll4816 [K] COG1309 Transcriptional regulator Mlo Mesorhizobium loti Length = 244 Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 7/206 (3%) Query: 12 RRRPGRPRNPESRARLLDAGRMLILKQGLDF-NIESIAVNAGVARRTFYSYFEDKEAFVA 70 R RP ++P R++++D R + +++G + ++ I AGV++ T Y YF +KE Sbjct: 22 RGRPAAGQDPVKRSQIIDGARRVFIEKGFEAASMNDITREAGVSKGTIYVYFANKEELFE 81 Query: 71 ELLRDAETAIGTADDELAGILEKP--LADALYELGIRYLEGINQRKEFRWARLLASANKT 128 L+ E GT + +L++ L L + G I + + R + A+ Sbjct: 82 ALI---EEERGTIFKNMYDMLDRADDLRQTLVKFGKVLSMKITSARVIQAQRTVIGASDR 138 Query: 129 YPRLVERMFHEARCREHALLTRIVEQAMASGRLISCDPAQAAGDIVGL-WHGVAVWQIAT 187 P + R + R H + + + A+ G L D AA L G+ I Sbjct: 139 IPDMGARFYERGPKRGHDKVVKFLNAAIERGLLKIDDVDLAAYQFTELCLAGLFRQCIFA 198 Query: 188 CSLPTLSHDEIDRRVRRGVHLFLCIY 213 S +EID VR GV +FL Y Sbjct: 199 YRTKAPSQEEIDHIVRSGVDMFLKNY 224 >RSp0815 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum Length = 207 Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 86/207 (41%), Gaps = 16/207 (7%) Query: 17 RPRNPESRARLLDAGRMLILKQGLD-FNIESIAVNAGVARRTFYSYFEDKEAFVAELLRD 75 R + E R ++DA + + G D ++ IA +G ++ T Y+YF KE AE++ Sbjct: 2 RKKTEEKRQSIIDAAFHVFREVGFDQASMSDIAARSGASKATLYNYFSSKEEMFAEIMS- 60 Query: 76 AETAIGTADDELAGILEK-----PLADALYELGIRYLEGINQRKEFRWARLLASANKTYP 130 GTA DE+ + P+AD L G YL I R R LA Sbjct: 61 -----GTAADEIREAFAQLKSSGPVADTLVVFGEHYLNAI-LRPSTLAIRRLAICEGDRS 114 Query: 131 RLVERMFHEARCREHALLTRIVEQAMASGRLISCDPAQAAGDIVGLWHGVAVWQIATCSL 190 L + A+L + +AM +G L D AA + L+ V ++ + Sbjct: 115 NLGRAFYEHGPKLGWAMLAEFLREAMEAGALKQRDTDIAAAHLHALYEAECV-ELCLLGV 173 Query: 191 P-TLSHDEIDRRVRRGVHLFLCIY-EP 215 P +S I V R V +F+ Y EP Sbjct: 174 PLDISPGRIAEGVARAVDVFMAAYGEP 200 >BMEII1117 [K] COG1309 Transcriptional regulator Bme Brucella melitensis Length = 247 Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%) Query: 7 EPGAARRRPGRPRNPESRARLLDAGRMLILKQGLDF-NIESIAVNAGVARRTFYSYFEDK 65 E R R ++P R+++L+ + + L+ G D ++ I AGV++ T Y YF K Sbjct: 37 ETECGRTRLAAGQDPAKRSQILEGAQSVFLRMGFDAASMNDITREAGVSKGTIYVYFNSK 96 Query: 66 EAFVAELLRDAETAIGTADDELAGILEKPLAD--ALYELGIRYLEGINQRKEFRWARLLA 123 E L + ++ G LEK ++ L + G+ I R R++ Sbjct: 97 EDLFVALCEHYRQTLFSS---FIGQLEKGFSNRQELIDFGVALTTLITSSIAIRAQRIVV 153 Query: 124 SANKTYPRLVERMFHEARCREHALLTRIVEQAMASGRLISCDPAQAAGDIVGLW 177 ++ P L R + R HA++ + ++ + +G L D + A + L+ Sbjct: 154 GVSERKPELAARFYERGPKRSHAIMAQSLQAMIDAGVLEQHDVTRTAYQLSDLF 207