BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3283.p (301 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2115 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 150 3e-36 YPO1934 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 104 2e-22 SMa0498 [K] COG0583 Transcriptional regulator Sme Sinorhizobium ... 99 1e-20 BS_yofA [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 93 7e-19 BH2712 [K] COG0583 Transcriptional regulator Bha Bacillus halodu... 87 6e-17 >PA2115 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 317 Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 146/248 (58%), Gaps = 11/248 (4%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNL+F+E F W A LKS AEKL TQ+++SSRIA LE+ELGV L R + LT Sbjct: 1 MNLKFLETFVWVARLKSFRLTAEKLFSTQASISSRIAVLEDELGVKLFVRDSRGVTLTPE 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 G + A +++D ++Q L ++ +RIG++++V+H+WL + + +P Sbjct: 61 GDKVLAYAERMMDTMHALKQSLDTGASTQGRIRIGAMDTVIHTWLSPLVARVTETFPAVE 120 Query: 121 LELTVETSPVLTEQIRRGALDLVF-TSTVGSDTAVRSRLMT-PMDMVF----VGHRERFG 174 +EL +T+ L+EQ+++G LDL+F T ++ ++ + L + P+ + + HR+ Sbjct: 121 IELMADTARNLSEQLQKGYLDLIFQTDSLRHESVLNLELGSYPLRWIVSTGSIYHRD--- 177 Query: 175 TRVHTLDELAAHDLITFQRGSQPHQGLLQLCQEWGVLNPRVHAISSISAMVQLVEGGFGV 234 +L +LA ++TF + S+PHQ +L L GV PR++ ++S++AM +L+ GFGV Sbjct: 178 --YASLADLARERVVTFSKHSRPHQDVLGLLHANGVAAPRLNCVNSVAAMTRLLRDGFGV 235 Query: 235 ATLPRASV 242 LP A V Sbjct: 236 GALPPALV 243 >YPO1934 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 320 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/274 (28%), Positives = 120/274 (43%), Gaps = 3/274 (1%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M L+ +EAF+WAA + + AAE+LHI+ S++S RI LE LG L DR + LT Sbjct: 1 MTLKQLEAFYWAARCSNFSIAAERLHISISSLSKRIVELEASLGCTLFDRSGYRAVLTET 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 GQ A LL+ +IR LG + + G E +WLP+++ R YP Sbjct: 61 GQNLLPRAFALLESAAEIRNTLGASEGLSGICNFGVGELSALTWLPSFIASARLLYPKLL 120 Query: 121 LELTVETSPVLTEQIRRGALDLVFTSTVGSDTAVRSRLMTPMDMVFVGHRERFGTRVHTL 180 L V+ L ++ +G +D + S + S + V++ V T Sbjct: 121 LAPHVDVGAALEGRVNKGEMDFAIIAGRSSRQNILSLPIAQAQFVWMA-SPTLANTVGTA 179 Query: 181 DEL--AAHDLITFQRGSQPHQGLLQLCQEWGVLNPRVHAISSISAMVQLVEGGFGVATLP 238 D A LIT G+ + + +G+ + +S A+V ++ G+ LP Sbjct: 180 DSALRQALPLITLPPGAGSSRIIDAWLMAYGIASVARINCNSWGAIVGMLIASVGIGILP 239 Query: 239 RASVRDLTRRLPLRILRCEAPLAALQIHASYRED 272 + L+ L L C PLAAL +R D Sbjct: 240 TSWAEKLSLHNQLEYLPCSEPLAALNYSFQWRRD 273 >SMa0498 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 299 Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/266 (28%), Positives = 129/266 (48%), Gaps = 9/266 (3%) Query: 1 MNLRF--VEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLT 58 M L F +E+F+W + L+S AA KL+++Q T+S RI LEE LGV L R+ +Q LT Sbjct: 1 MTLSFSALESFYWVSQLRSFNAAANKLNVSQPTVSYRIRELEERLGVSLFVRQRRQLVLT 60 Query: 59 VAGQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPD 118 G+ + A ++ + R I + + LR+G I+S LP+ L E+ R+ Sbjct: 61 SEGEALKHYAESMIAIARDIESNIKTRNTRLPTLRVGVIDSFAAVCLPSLLDELDIRFAG 120 Query: 119 FALELTVETSPVLTEQIRRGALDLVFTSTVGSDTAVRSRLMTPMDMVFVG-HRERFGTRV 177 + TV+TS L +Q+ G LD+ ST S V L+ + ++ H+ + Sbjct: 121 ARIAATVDTSHKLADQLSEGLLDIAVLSTPPSHDNVALELLGRQSVDWIASHKLGLPQTI 180 Query: 178 HTLDELAAHDLITFQRGSQPHQ---GLLQLCQEWGVLNPRVHAISSISAMVQLVEGGFGV 234 + +EL + S H G L G+ R++ +S+ ++ LVE G G+ Sbjct: 181 VSDEELLRQRIFATPAPSNLHSLTTGFLAATAGAGL---RLNVCNSLGTILNLVESGTGI 237 Query: 235 ATLPRASVRDLTRRLPLRILRCEAPL 260 + LP +++ R +++L+ L Sbjct: 238 SILPSRLLQEQIRHGTIQVLKTRTTL 263 >BS_yofA [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 285 Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 127/266 (47%), Gaps = 10/266 (3%) Query: 9 FHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVAGQRFQRLA 68 F A SIT+AA+ L+ QS +++R+ +LEE+L + L R + +LT AG+ + A Sbjct: 9 FQAVAREGSITKAAQMLNYVQSNVTARVHNLEEDLNIRLFHRTNRGMKLTAAGENLLQYA 68 Query: 69 VKLLDMQRQIRQE--LGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFALELTVE 126 ++L + Q + + GP LRIGS+E++ + LP R+P+ L + Sbjct: 69 DQVLSLLDQAEKSTRMSRQPKGP--LRIGSLETMAVTHLPEHAASFLRRFPEVDLSVNTA 126 Query: 127 TSPVLTEQIRRGALDLVFTSTVGSDTAVRSRLMTPMDMVFVGHRERFGTRVHTLDELAAH 186 + L +Q+ +D F AVR ++ ++V + RE T +++ Sbjct: 127 DTHHLIQQVLDHKVDGAFVYGPVEHAAVRQLHVSHDELVLISSREG------TAEDMLQQ 180 Query: 187 DLITFQRGSQPHQGLLQLCQEWGVLNPRVHAISSISAMVQLVEGGFGVATLPRASVRDLT 246 ++ F G + +L +E G+ N ++ ++ A+++ V G G A LP+++V Sbjct: 181 PMLFFGAGCSHRDRVKRLLEEAGIHNQKIIEFGTLEAIIKGVSAGMGTALLPKSAVDGSE 240 Query: 247 RRLPLRILRCEAPLAALQIHASYRED 272 R + I + L+I YR+D Sbjct: 241 HRTNVWIHQLPPSYQDLEIVFIYRKD 266 >BH2712 [K] COG0583 Transcriptional regulator Bha Bacillus halodurans Length = 296 Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 9/296 (3%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 MNL F+ A+ KS ++AA KL+ITQ ++S I LEE L V L R K LT Sbjct: 1 MNLELYRVFYVTATEKSFSKAAAKLYITQPSVSHAIKQLEEMLEVQLFTRHAKGVELTKE 60 Query: 61 GQRFQ---RLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYP 117 G+ + A+ ++ Q+ QEL G + IG +S ++ +Q ++RYP Sbjct: 61 GEAIYPSIQQALGSINQAEQLLQELKQLEGG--RVTIGGSDSTFKYFVLPSIQRFQARYP 118 Query: 118 DFALELTVETSPVLTEQIRRGALDLVFTSTVGSDTAVRSR-LMTPMDMVFVGHRER-FGT 175 + + L ++P + E++ G++D F + V + +T + VG + R Sbjct: 119 NIHIRLQHGSTPQIIEKLDNGSIDFGFVHLPVRERHVEIQPFLTISSLFVVGEQNRELAE 178 Query: 176 RVHTLDELAAHDLITFQRGSQPHQGLLQLCQEWGV-LNPRVHAISSISAMVQLVEGGFGV 234 R L+E+ + LITF S Q L +L + G+ + P + + S+ +++ V+ G GV Sbjct: 179 RPLPLEEVLDYPLITFSESSSSTQFLQRLFERQGLHVQPDIE-VGSVELLIECVKLGMGV 237 Query: 235 ATLPRASVRDLTRRLPLRILRCEAPLAALQIHASYREDPSSSLAELVLDSALDHAR 290 A + + V + L L+ + P+ I + SLA V L R Sbjct: 238 AFVTKDFVLRELEKGELMPLQMKEPIEQRAIGIVTKRGQPLSLAAKVFLEGLHQER 293