BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3282.p         (114 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VCA0468 [JD] COG2026 Cytotoxic translational repressor of toxin-...   112   2e-25
SMc01995 Non COG                                                       38   0.006
asr1400 [JD] COG2026 Cytotoxic translational repressor of toxin-...    35   0.046
slr0664 [JD] COG2026 Cytotoxic translational repressor of toxin-...    33   0.11 
RSp0151 [M] COG3209 Rhs family protein Rso Ralstonia solanacearum      30   1.1  

>VCA0468 [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin
           stability system Vch Vibrio cholerae
          Length = 110

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/105 (55%), Positives = 73/105 (69%), Gaps = 2/105 (1%)

Query: 1   MEAVFKETRMFEAYRANYLSDEAYAELQQMLMRHPHAGKLIKDTGGLRKIRFPDARRCKG 60
           M++VF E+ +FE YR  YLSDE Y   Q  LM +P  G +I+ TGGLRKIR   A + KG
Sbjct: 1   MKSVFVESTIFEKYRDEYLSDEEYRLFQAELMLNPKLGDVIQGTGGLRKIRV--ASKGKG 58

Query: 61  KRGGLRVIYYFWSEERQFWLFSIYDKNEMADLTAEQRKLLKHVLE 105
           KRGG R+IYYF  E+R+F+L +IY KNEM+DL A QRK L   +E
Sbjct: 59  KRGGSRIIYYFLDEKRRFYLLTIYGKNEMSDLNANQRKQLMAFME 103


>SMc01995 Non COG
          Length = 128

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 32  MRHPHAGKLIKDTGGLRKIRFPDARRCKGKRGGLRVIYYFWSEERQFWLFSIYDKNEMAD 91
           +R    G++  D GG   I+   AR  +GK GG R I  F  E+R F++F  + K+E A+
Sbjct: 29  VRRAERGQIDADLGG-GVIKQRVARAGQGKSGGYRTIILFRLEQRAFFVFG-FAKSEQAN 86

Query: 92  LTAEQRKLLKHVLEDELA 109
           +   +  L K + ++ LA
Sbjct: 87  IEDGEEALFKKMAKELLA 104


>asr1400 [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin
          stability system Nos Nostoc sp. PCC 7120
          Length = 80

 Score = 35.0 bits (79), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 49 KIRFPDARRCKGKRGGLRVIYYFWSEERQFWLFSIYDKNEMADLTAE 95
          K+R  ++   KGK GG R+IYY  +      L ++Y K+E  D+ A+
Sbjct: 15 KLRVRNSDTQKGKSGGYRLIYYVKTATG-IILLTVYTKSEQVDIAAD 60


>slr0664 [JD] COG2026 Cytotoxic translational repressor of toxin-antitoxin
           stability system Syn Synechocystis
          Length = 120

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 49  KIRFPDARRCKGKRGGLRVIYYFWSEERQFWLFSIYDKNEMADLTA 94
           K+R  ++   KGK  G R+IY   S E    L +IY K E  D+ A
Sbjct: 62  KLRIKNSNIQKGKSSGYRLIYLLES-ENSILLLTIYSKAEQEDIAA 106


>RSp0151 [M] COG3209 Rhs family protein Rso Ralstonia solanacearum
          Length = 1710

 Score = 30.4 bits (67), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 2   EAVFKETRMFEAYRANYLSDEAYAELQQMLMRHPHAGK---LIKDTGGLRKIRFPDARRC 58
           E+ ++E+R     +A  L+D A  EL +M  R  HA +   L+K++   R ++ P     
Sbjct: 130 ESAWRESRALSQPQAKRLADRALGELLRMHARLGHADRVEALLKESKD-RPLQGPATEAV 188

Query: 59  KGKRGGL 65
            G R GL
Sbjct: 189 AGAREGL 195