BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3276.p         (245 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0733 Non COG                                                        39   0.013
RSp0735 Non COG                                                        38   0.022
PA3607 [E] COG3842 ABC-type spermidine/putrescine transport syst...    32   1.7  
YGL056c [R] COG0517 FOG Sce Saccharomyces cerevisiae                   30   3.4  
YIR033w [R] COG0666 FOG Sce Saccharomyces cerevisiae                   29   8.6  

>RSp0733 Non COG
          Length = 315

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 185 RSKSGQICPKSGFWLVADLVDDKIECEQGDIMPLSMG--RDVAWEWISQDIVPR 236
           R+  G  CP+SG+W      + +   +QGD+MP+         W+W +    P+
Sbjct: 261 RAPGGDACPRSGWWFTPAAANSRRHFQQGDVMPIVTSDYGSTIWQWDADQGEPK 314


>RSp0735 Non COG
          Length = 413

 Score = 37.7 bits (86), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 173 PCPETI-TDVVRIRSKSGQICPKSGFWLVADLVDDKIECEQGDIMP--LSMGRDVAWEWI 229
           P  +T+    + +R ++GQ CPKSG+W+       +   +QG  MP  +S      W+W 
Sbjct: 346 PTAQTVPASNLHLRCEAGQACPKSGYWITPAKSGSRRYFQQGTPMPEVISDYGSTIWQWD 405

Query: 230 SQDIVPR 236
           S    P+
Sbjct: 406 SDQSDPK 412


>PA3607 [E] COG3842 ABC-type spermidine/putrescine transport systems,
           ATPase components Pae Pseudomonas aeruginosa
          Length = 363

 Score = 31.6 bits (70), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 74  KTYPLFRHLKEALFEDLSNGLQIAIAPTQNNDGSEKQGYSTVRLSDKDGRILHEVSYNSR 133
           ++Y LF H+  A  ++++  L++A       D   +Q    VRL+DK GR+  ++S   R
Sbjct: 84  QSYALFPHMSVA--QNIAFPLKMAGVAKSEIDARVEQALKDVRLADKGGRMPTQLSGGQR 141


>YGL056c [R] COG0517 FOG Sce Saccharomyces cerevisiae
          Length = 527

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 10  SEIIDFDPANGLWRYPEEEQRTSDLEILGRFSLPVRGSYTEVNEKRYYLYWTADRILNLI 69
           +EI+   P N  ++ PE E  ++ + ILG  S   R + T V   +     +  R++  +
Sbjct: 180 AEIVKLTPKNPFYKLPETENLSTVIGILG--SGVHRVAITNVEMTQIKGILSQRRLIKYL 237

Query: 70  TPDNKTYPLFRHLKEALFEDLSNGL 94
             + +++P  + L ++  E+L+ G+
Sbjct: 238 WENARSFPNLKPLLDSSLEELNIGV 262


>YIR033w [R] COG0666 FOG Sce Saccharomyces cerevisiae
          Length = 1113

 Score = 29.3 bits (64), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 20/168 (11%)

Query: 85  ALFEDLSNGLQI--AIAPTQNNDGSEKQGYSTVRLSDKDGRILHEVSYNSRYY-----LE 137
           +LFE+  NG +   ++    N   S K   S+   S  D   L+E  + S+       +E
Sbjct: 827 SLFEEFQNGTKFTDSVETDSNYSISRKYSQSSFNSSLLDNESLNENLFESQSMINPTSME 886

Query: 138 LYMSDLTPFTDRTLSTWDFFVALKDG------VEKIRKKCVPCPETITDVVRIRSKSGQI 191
           +    L  F + + S +D     +DG       +++ K  V C E  ++++ I S + + 
Sbjct: 887 IQHPTLQLFENSSYSEYDQSDFEEDGDEDLFVTDEVEKPGVACREEQSELLDIGSSANEP 946

Query: 192 CPKSG---FW--LVADLVDDKIECEQGDIMPLSMGRDVAWEWISQDIV 234
              +G    W  ++  + DD  + E  D+ PLS G+D   +  +QD +
Sbjct: 947 EEDNGSTSLWNRVLHRINDDLPKYE--DLFPLSWGKDDKLKTTNQDSI 992