BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3269.p (695 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 364 e-100 PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa 325 2e-88 STM3388_3 [T] COG2200 FOG Sty Salmonella typhimurium LT2 309 1e-83 RSc1545 [T] COG5001 Predicted signal transduction protein contai... 290 8e-78 RSc0510_1 [T] COG3300 MHYT domain (predicted integral membrane s... 278 2e-74 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust. Identities = 179/263 (68%), Positives = 205/263 (77%) Query: 423 YHFFEPSMNANAHHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQR 482 Y FFE SMN N H QLQ +Q+LR+A+ER +L L YQPKF P G V+G EAL+RWQHP+R Sbjct: 1 YCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPER 60 Query: 483 GLVGPDEFIGLAERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHL 542 GLV PD FI LAE++GLI+P+GAWVLDEACRQM QW G+A W IAVNLSA+QFA L Sbjct: 61 GLVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQWSIAVNLSAVQFAHAAL 120 Query: 543 VEVVRTALDKHQLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSL 602 V+ VR L +H L P LTLE+TESTAM D +ASL LQ++ +GV I+IDDFGTGYSSL Sbjct: 121 VDTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSSL 180 Query: 603 LYLKRLPAHELKIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLA 662 LYLKRLPA ELKIDRGFVRDL+ SEDAAIVSA+VALG+ L LRIVAEGVETE QQ FL Sbjct: 181 LYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFLT 240 Query: 663 AAGCHALQGYLRGRPMAPDLFLQ 685 GCHALQG L GRPM L+ Sbjct: 241 RLGCHALQGNLLGRPMTAQAVLE 263 >PA1727_3 [T] COG2200 FOG Pae Pseudomonas aeruginosa Length = 254 Score = 325 bits (833), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 162/253 (64%), Positives = 197/253 (77%) Query: 435 HHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLA 494 QLQ L +LR A+ER+QL L YQPK P+G ++G EALLRW+HPQ GL+ P +F+ LA Sbjct: 1 QEQLQLLHDLRQALERRQLVLHYQPKVLAPNGPMIGVEALLRWEHPQHGLITPGQFLPLA 60 Query: 495 ERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQ 554 E++GLI+ IG WVLDEACRQMR WL G+A W IAVNLSALQFA LV+ VR AL +H Sbjct: 61 EKTGLIVQIGEWVLDEACRQMRLWLDGGHADWNIAVNLSALQFAHAGLVDSVRNALLRHS 120 Query: 555 LPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELK 614 L P L LEVTESTAM D +ASL L++++ +GV I+IDDFGTGYSSLLYLKRLPA ELK Sbjct: 121 LEPSHLILEVTESTAMRDADASLVILEQLSAMGVGISIDDFGTGYSSLLYLKRLPASELK 180 Query: 615 IDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLR 674 IDRGF+ +L+ S+DAAIVSAIVALGR L L+IVAEGVETE QQ+FL GC++LQG+L Sbjct: 181 IDRGFINELAHDSDDAAIVSAIVALGRTLNLKIVAEGVETEAQQEFLTRLGCNSLQGFLL 240 Query: 675 GRPMAPDLFLQTM 687 GRPM + L ++ Sbjct: 241 GRPMPAEQLLASV 253 >STM3388_3 [T] COG2200 FOG Sty Salmonella typhimurium LT2 Length = 273 Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 146/256 (57%), Positives = 193/256 (75%) Query: 434 AHHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGL 493 A QLQ + +L +A+ER++LRLVYQPKF P G ++G EALLRW HP++G++ PD+F+ L Sbjct: 3 AQTQLQLMNDLWLALERQELRLVYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPL 62 Query: 494 AERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKH 553 AE++GLI+ IG+WV+DEACRQ+R+W GY W +AVNLSALQF P LV+ + +L +H Sbjct: 63 AEKTGLIVTIGSWVIDEACRQLREWHLQGYDLWSVAVNLSALQFEQPGLVDTITRSLARH 122 Query: 554 QLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHEL 613 + P L LE+TE+TAM+ E S+ L ++ E+GV+ +IDDFGTGYSSLLYLKRLPA EL Sbjct: 123 SIRPDLLILEITETTAMNKPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACEL 182 Query: 614 KIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYL 673 KIDR FV +LSE + A IV+AIVAL +AL L+IVAEGVE E QQQFL GCH LQG+L Sbjct: 183 KIDRAFVHELSEAGDGATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFL 242 Query: 674 RGRPMAPDLFLQTMRE 689 G+P + + +R+ Sbjct: 243 LGKPRTAEEIARDIRD 258 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 171/428 (39%), Positives = 246/428 (57%), Gaps = 10/428 (2%) Query: 257 EANEELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLG 316 EA + Q+ +D LT L NRT ++L + A + L+++DLDGFK +ND+ G Sbjct: 333 EAENRIRQLAHYDTLTGLANRTNFREQLDA---RLAAPEARLGLLYIDLDGFKLVNDTKG 389 Query: 317 HHVGDRLLVEVARRLSSIM-RAQDTVARLGGDEFVILVELERPEGAMPVAEKLVEVVNQA 375 H GD LL VA+RL ++ R +ARLGGDEF +LV + + A +A L+E + Sbjct: 390 HRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVPHDDADRAATLATALIEALGAP 449 Query: 376 FTL-AQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANA 434 + L A Q +R+ AS+GIA+ P G +L+ AD A+Y K AG+ F M Sbjct: 450 YALGADQNVRIGASIGIALAPAHGRDTENLLARADIALYAAKAAGKGLARLFCADMETRI 509 Query: 435 HHQLQWLQELRVAVERK-QLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGL 493 + +LR A+E + +L + YQP + G+V EAL+RW H +RG V PDEF+ + Sbjct: 510 QARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVTAREALVRWHHAERGWVPPDEFVPI 569 Query: 494 AERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKH 553 AE+SGLI +G +VL ACR+ +W ++AVN+S +Q L + V AL Sbjct: 570 AEQSGLIDQLGRFVLHRACREATRWEDGA----RVAVNVSPMQLGKATLAQTVHAALIDS 625 Query: 554 QLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHEL 613 L P L +EVTE+ + + S + L+++ ++GV +A+DDFGTGYSSL +L+ P ++ Sbjct: 626 GLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGVRVALDDFGTGYSSLAHLRAFPFDKI 685 Query: 614 KIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYL 673 KIDR FVRDL E + A +V AI LGR L + VAEGVET+ + + AGC QGY Sbjct: 686 KIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTVAEGVETQAHVRGIREAGCTEAQGYY 745 Query: 674 RGRPMAPD 681 GRP D Sbjct: 746 YGRPAPSD 753 >RSc0510_1 [T] COG3300 MHYT domain (predicted integral membrane sensor domain) Rso Ralstonia solanacearum Length = 236 Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/239 (66%), Positives = 185/239 (77%), Gaps = 3/239 (1%) Query: 1 MLIAHYDKLLVVVSLLVAILASYTALDMAERISTSNHLYSRAARFWLAGGAIAMGVGIWS 60 ML Y LLV+ SL VAILASYTALDMA RI+ + RAA++WLAGGA AMG+GIWS Sbjct: 1 MLAGSYHPLLVLFSLCVAILASYTALDMAGRIAMAR---GRAAQWWLAGGACAMGLGIWS 57 Query: 61 MHFIGMLAFRLPIALGYDAWITLVSLLIAVLTSGFALWIVTRAELPLRRLLGSAVLMGSG 120 MHF+GMLAFRLPI LGYD WITL SLLIA+ S FALW+V + LP RL G A+LMG+G Sbjct: 58 MHFVGMLAFRLPIPLGYDTWITLASLLIAIALSAFALWLVCQRRLPWPRLAGGALLMGAG 117 Query: 121 IVAMHYTGMAAMRMQPGIDYDLVLFVGSVIIAVVTSATALWIAFSLRRNTPHVRVARAGA 180 + +MHYTGMAAMRM PGI YD LF SV+IA++ S ALWIAF LRR + R RAGA Sbjct: 118 VASMHYTGMAAMRMSPGILYDPALFCLSVVIAMLASGAALWIAFRLRRQSRRRRAMRAGA 177 Query: 181 SVVMGLAIVGMHYTGMAAASFPRGAVCLAAREGVGSGWLAILIIVVTLAVLTIALLTSV 239 +VVMGLAIVGMHYTGMAAA FP G++C AAR G + WLA++IIVVTLAVL +ALL SV Sbjct: 178 AVVMGLAIVGMHYTGMAAAGFPLGSICGAARGGASAEWLALVIIVVTLAVLAMALLISV 236