BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3258.p (215 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1989 [E] COG0066 3-isopropylmalate dehydratase small subunit ... 362 e-100 NMA1452 [E] COG0066 3-isopropylmalate dehydratase small subunit ... 341 6e-94 NMB1034 [E] COG0066 3-isopropylmalate dehydratase small subunit ... 338 6e-93 PA3120 [E] COG0066 3-isopropylmalate dehydratase small subunit P... 318 5e-87 XF2374 [E] COG0066 3-isopropylmalate dehydratase small subunit X... 302 4e-82 >RSc1989 [E] COG0066 3-isopropylmalate dehydratase small subunit Rso Ralstonia solanacearum Length = 216 Score = 362 bits (930), Expect = e-100, Method: Compositional matrix adjust. Identities = 167/215 (77%), Positives = 189/215 (87%), Gaps = 1/215 (0%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M +F +H GLVAPLDR NVDTDAIIPKQFLKSIKR+GFGPNLFDEWRY D GEPG DNSK Sbjct: 1 MEQFTIHTGLVAPLDRENVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYKDVGEPGQDNSK 60 Query: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120 RPLNPDFVLNQ RYQG+S+LL+RKNFGCGSSREHAPWAL QYGFRA+IAPSFADIFFNNC Sbjct: 61 RPLNPDFVLNQPRYQGASVLLARKNFGCGSSREHAPWALQQYGFRAIIAPSFADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180 +KNGLLPIVLTE QVDHLFNE +AF GY+L +DL+KQ+V T G+ YPFD++ FRKYCL Sbjct: 121 FKNGLLPIVLTESQVDHLFNETQAFTGYQLTVDLDKQVVVTPGGT-AYPFDVTAFRKYCL 179 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215 LNGFDDIGLTLR AD I+AYE + L + PWL++ + Sbjct: 180 LNGFDDIGLTLRYADQIKAYEAQRLAKMPWLAHKL 214 >NMA1452 [E] COG0066 3-isopropylmalate dehydratase small subunit NmA Neisseria meningitidis Z2491 Length = 213 Score = 341 bits (875), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 163/213 (76%), Positives = 180/213 (84%), Gaps = 1/213 (0%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M F +VAPLDR+NVDTDAIIPKQFLKSIKRSGFGPN FDEWRYLDHGEPGMDNSK Sbjct: 1 MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFDEWRYLDHGEPGMDNSK 60 Query: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120 RPLNPDF LNQ RYQG+ ILL+RKNFGCGSSREHAPWALD YGFRAVIAPSFADIFFNNC Sbjct: 61 RPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDYGFRAVIAPSFADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180 YKNGLLPIVLTE+QVD LF EV+A GYRL IDL +Q ++T +G + + FDI+E RK+CL Sbjct: 121 YKNGLLPIVLTEEQVDRLFKEVEANEGYRLSIDLAEQTLTTPSG-ETFTFDITEHRKHCL 179 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSN 213 LNG D+IGLTL+ AD I A+EEK QPWL N Sbjct: 180 LNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFN 212 >NMB1034 [E] COG0066 3-isopropylmalate dehydratase small subunit Nme Neisseria meningitidis MC58 Length = 213 Score = 338 bits (866), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 161/213 (75%), Positives = 180/213 (84%), Gaps = 1/213 (0%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M F +VAPLDR+NVDTDAIIPKQFLKSIKRSGFGPN FDEWRYLDHGEPGMDNSK Sbjct: 1 MKAFTKITAIVAPLDRSNVDTDAIIPKQFLKSIKRSGFGPNAFDEWRYLDHGEPGMDNSK 60 Query: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120 RPLNPDF LNQ RYQG+ ILL+RKNFGCGSSREHAPWALD YGFRAVIAPSFADIFFNNC Sbjct: 61 RPLNPDFSLNQPRYQGAQILLTRKNFGCGSSREHAPWALDDYGFRAVIAPSFADIFFNNC 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180 YKNGLLPIVLTE++VD LF EV+A GY+L IDL +Q ++T +G + + FDI+E RK+CL Sbjct: 121 YKNGLLPIVLTEERVDRLFKEVEANEGYQLSIDLAEQTLTTPSG-ETFTFDITEHRKHCL 179 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSN 213 LNG D+IGLTL+ AD I A+EEK QPWL N Sbjct: 180 LNGLDEIGLTLQHADEIHAFEEKRRQSQPWLFN 212 >PA3120 [E] COG0066 3-isopropylmalate dehydratase small subunit Pae Pseudomonas aeruginosa Length = 212 Score = 318 bits (815), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 150/211 (71%), Positives = 176/211 (83%), Gaps = 1/211 (0%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M + GLVAPLDRANVDTD IIPKQFLKSIKR+GFGPNLFDEWRYLD G+PG DNSK Sbjct: 1 MKPYTQTTGLVAPLDRANVDTDQIIPKQFLKSIKRTGFGPNLFDEWRYLDVGQPGQDNSK 60 Query: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120 RPLNPDFVLNQ RYQG+S+LL+R+NFGCGSSREHAPWALD+YGFR VIAPS+ADIFFNN Sbjct: 61 RPLNPDFVLNQPRYQGASVLLARENFGCGSSREHAPWALDEYGFRTVIAPSYADIFFNNS 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180 +KNGLLPI+L E +VD LF +V+A GY+L IDL Q V+ +G +V F++ FRK+CL Sbjct: 121 FKNGLLPIILPEAEVDELFRQVEANEGYQLSIDLAAQTVTRPDG-KVLGFEVDPFRKHCL 179 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWL 211 LNG DDIGLTL+ AD IRA+E+ + +QPWL Sbjct: 180 LNGLDDIGLTLQDADAIRAFEDGYRQQQPWL 210 >XF2374 [E] COG0066 3-isopropylmalate dehydratase small subunit Xfa Xylella fastidiosa 9a5c Length = 215 Score = 302 bits (773), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 143/211 (67%), Positives = 164/211 (77%), Gaps = 1/211 (0%) Query: 1 MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60 M F H GLV PLDR NVDTD IIPKQFLKSIKR+GFGPNLFDEWRYLD G+PG DNSK Sbjct: 1 MKPFTQHTGLVCPLDRVNVDTDQIIPKQFLKSIKRTGFGPNLFDEWRYLDAGQPGQDNSK 60 Query: 61 RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120 RP+N DFVLN RY+G+S+LL+R NFGCGSSREHA WALD+YGFR VIAPSFADIFFNN Sbjct: 61 RPINSDFVLNFPRYRGASVLLARDNFGCGSSREHAAWALDEYGFRTVIAPSFADIFFNNS 120 Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180 +KNGLLP+VL + +VD LF + + GY L +DL Q V T +G+ Y F I FRK+CL Sbjct: 121 FKNGLLPLVLNKVEVDALFAQCQVTEGYTLTVDLAAQQVITQDGT-TYAFQIDTFRKHCL 179 Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWL 211 LNG DDIGLTL+ A+ IR +E H QPWL Sbjct: 180 LNGLDDIGLTLQHAEAIRVFEAAHRIRQPWL 210