BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3246.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1977 [R] COG1286 Uncharacterized membrane protein, required f...   117   1e-26
PA3109 [R] COG1286 Uncharacterized membrane protein, required fo...    85   9e-17
STM2363 [R] COG1286 Uncharacterized membrane protein, required f...    84   2e-16
PM0702 [R] COG1286 Uncharacterized membrane protein, required fo...    83   2e-16
HI1206 [R] COG1286 Uncharacterized membrane protein, required fo...    83   3e-16

>RSc1977 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Rso Ralstonia solanacearum
          Length = 165

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 100/162 (61%), Gaps = 1/162 (0%)

Query: 2   TIFDYLVLLILACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPG-EL 60
           T FDY VL I+  S ++G  RG +RE+L+LAGW+ A  VA T+    +  +P+ +PG  +
Sbjct: 4   TFFDYGVLFIVVASALVGLFRGLIREILALAGWLFAAWVAYTFSGVAAGWMPESLPGGPV 63

Query: 61  TRLIVAFIALFIGTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALL 120
            R ++ F+ LF+ T +  +LV   L  ++++ GL   DR LG VFG+ARG ++++ +  +
Sbjct: 64  ARTVLGFVLLFVVTVIGTSLVGALLSAVLESAGLKPADRGLGMVFGLARGGVIILVLMTV 123

Query: 121 CGTTEIPRQPFWTQARFSPWVVQAAQAVLPYLPGKLAEHVSF 162
            G T +P QPFW  A   P+  +AA+A  P LP  +A+++ +
Sbjct: 124 AGFTSVPEQPFWRDALTRPYAEEAARAAKPLLPPDVAKYIHY 165


>PA3109 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Pae Pseudomonas aeruginosa
          Length = 180

 Score = 84.7 bits (208), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/138 (44%), Positives = 80/138 (57%)

Query: 2   TIFDYLVLLILACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPGELT 61
           T  D+ ++ I+  S +I   RGFV+E LSL  WIVA  VA  +G AL+  L + +     
Sbjct: 4   TWVDWTMVAIIVVSSLISLSRGFVKEALSLLTWIVAGAVAWMFGGALAQHLGEYIQTPSA 63

Query: 62  RLIVAFIALFIGTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALLC 121
           R+I A   LFI T LL ALV   +GEL++ TGL   DR LG VFG ARGVLLVV +  L 
Sbjct: 64  RIIAACALLFIATLLLGALVNYLIGELIRVTGLSGTDRFLGMVFGGARGVLLVVLLVGLL 123

Query: 122 GTTEIPRQPFWTQARFSP 139
               + + P+W Q+   P
Sbjct: 124 SLAPVQQDPWWQQSVLMP 141


>STM2363 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Sty Salmonella typhimurium LT2
          Length = 162

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 80/157 (50%), Gaps = 9/157 (5%)

Query: 5   DYLVLLILACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPGELTRLI 64
           DY ++ ++A S ++  +RGFVRE LSL  W  A  VA+ Y   LS         EL R  
Sbjct: 5   DYAIIAVIAFSCLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGF-EDELVRNG 63

Query: 65  VAFIALFIGTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALLCGT- 123
           +A   LFI T ++ A+V   +G+LV+ TGL   DR LG  FG  RG L+V A+     T 
Sbjct: 64  IAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGICFGALRGALIVAAILFFLDTF 123

Query: 124 TEIPRQPFWTQARFSP-------WVVQAAQAVLPYLP 153
           T + +   W++++  P       W     Q+   +LP
Sbjct: 124 TGLSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP 160


>PM0702 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Pmu Pasteurella multocida
          Length = 163

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 88/162 (54%), Gaps = 9/162 (5%)

Query: 5   DYLVLLILACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPGELTRLI 64
           DY+++ I+A S+II  LRGF+REV+S+A W+VA  VAN +   L+  L  +    L R  
Sbjct: 3   DYIIIAIIAFSIIISLLRGFIREVMSVASWVVAFFVANHFYPYLANYLTQIESLYL-RNG 61

Query: 65  VAFIALFIGTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALLCGT- 123
            A   LF+ T ++  +V   LGELV  TGL   DR LG+ FG+ RGVL+V A+     T 
Sbjct: 62  TAIAILFVATLIVGGIVNHILGELVDKTGLTGTDRVLGACFGLIRGVLIVAALLFFMDTF 121

Query: 124 TEIPRQPFWTQARFSP-------WVVQAAQAVLPYLPGKLAE 158
           T   +  +W +++  P       W  Q  QA   ++   L +
Sbjct: 122 TNFSQTVWWKESKLIPHFGFIVEWFFQQLQATSSFINSTLNK 163


>HI1206 [R] COG1286 Uncharacterized membrane protein, required for colicin
           V production Hin Haemophilus influenzae
          Length = 163

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 9/154 (5%)

Query: 13  ACSVIIGTLRGFVREVLSLAGWIVALVVANTYGEALSAMLPDVVPGELTRLIVAFIALFI 72
           A S+++  LRGFVREVLSL  WIVA +VA+ +   L+A L   +     R   A   LF+
Sbjct: 11  AFSILVSLLRGFVREVLSLGSWIVAFIVASQFYPYLAAYLTQ-IESMYIRNGTAIAILFV 69

Query: 73  GTRLLVALVAKTLGELVKATGLGFLDRTLGSVFGVARGVLLVVAVALLCGT-TEIPRQPF 131
            T ++ A+V   + +LV  TGL   DR LG+ FG+ RG L+V A+     T T   +  +
Sbjct: 70  LTLIVGAIVNYVISQLVDKTGLSGTDRVLGAAFGLVRGALIVAALLFFMDTFTNFEQTDW 129

Query: 132 WTQARFSP-------WVVQAAQAVLPYLPGKLAE 158
           W +++  P       W  Q  QA   +L   L +
Sbjct: 130 WKESQLIPHFGFIIEWFFQQLQASSSFLTPTLNQ 163