BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3238.p (211 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1141 [J] COG0009 Putative translation factor (SUA5) Rso Ralst... 289 4e-78 NMB0436 [J] COG0009 Putative translation factor (SUA5) Nme Neiss... 254 1e-67 NMA2049 [J] COG0009 Putative translation factor (SUA5) NmA Neiss... 253 3e-67 yciO [J] COG0009 Putative translation factor (SUA5) Eco Escheric... 243 2e-64 ZyciO [J] COG0009 Putative translation factor (SUA5) EcZ Escheri... 243 2e-64 >RSc1141 [J] COG0009 Putative translation factor (SUA5) Rso Ralstonia solanacearum Length = 207 Score = 289 bits (739), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 142/208 (68%), Positives = 169/208 (81%), Gaps = 1/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF+IHP PQ RLI+QA +II GGL+ALPTDSCYAL C LD+K AVER+RR+RG+D Sbjct: 1 MSQFFQIHPTTPQGRLIRQAVEIIRAGGLIALPTDSCYALACHLDDKAAVERLRRVRGID 60 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIG 120 EKHHLTL+CRDLSE+A +A+VDNRQYR +KAATPG F F+LEAT+EVPRRLSHPSRKTIG Sbjct: 61 EKHHLTLMCRDLSELATFARVDNRQYRAVKAATPGPFVFLLEATREVPRRLSHPSRKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEELPLTHAEDIRSHLEKRIELVIDSGACSLE 180 LRVP++ I L+ ELG+PLL TL LP +E PL A+ IR+ LE+++ELVID G E Sbjct: 121 LRVPDHPIPLALMAELGEPLLSATLQLPGDEAPLNEADAIRALLERQLELVIDGGPAPAE 180 Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIFGL 208 PTTVIDLT EP LVR+GRGD + GL Sbjct: 181 PTTVIDLTGG-EPELVRRGRGDPARVGL 207 >NMB0436 [J] COG0009 Putative translation factor (SUA5) Nme Neisseria meningitidis MC58 Length = 213 Score = 254 bits (648), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 131/208 (62%), Positives = 161/208 (77%), Gaps = 2/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 M+QFF IHPDNPQ RLIKQA +I++KGG+V PTDSCYAL C+L +K A+ER+ IR +D Sbjct: 8 MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKID 67 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIG 120 KHHLTL+C DLSE+ YAKVDN Q+R +KAATPG +TFIL+ATK+VP R HP RKTIG Sbjct: 68 LKHHLTLMCADLSELGTYAKVDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIG 127 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEELPLTHAEDIRSHLEKRIELVIDSGACSLE 180 LR+P+N IA LL ELG+PLL TL+LP++ PLT +IR LE ++LVID G C E Sbjct: 128 LRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIRERLEHAVDLVIDGGWCGTE 187 Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIFGL 208 PTTV+D+TD E LVRQG GD ++FGL Sbjct: 188 PTTVVDMTDGTE--LVRQGCGDTAVFGL 213 >NMA2049 [J] COG0009 Putative translation factor (SUA5) NmA Neisseria meningitidis Z2491 Length = 206 Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 130/208 (62%), Positives = 161/208 (77%), Gaps = 2/208 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 M+QFF IHPDNPQ RLIKQA +I++KGG+V PTDSCYAL C+L +K A+ER+ IR +D Sbjct: 1 MAQFFAIHPDNPQERLIKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSIRKID 60 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIG 120 KHHLTL+C DLSE+ YAK+DN Q+R +KAATPG +TFIL+ATK+VP R HP RKTIG Sbjct: 61 LKHHLTLMCADLSELGTYAKIDNVQFRQLKAATPGPYTFILQATKDVPARTLHPKRKTIG 120 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEELPLTHAEDIRSHLEKRIELVIDSGACSLE 180 LR+P+N IA LL ELG+PLL TL+LP++ PLT +IR LE ++LVID G C E Sbjct: 121 LRIPDNAIAQALLGELGEPLLSCTLMLPEDGEPLTDPYEIRECLEHAVDLVIDGGWCGTE 180 Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIFGL 208 PTTV+D+TD E LVRQG GD ++FGL Sbjct: 181 PTTVVDMTDGTE--LVRQGCGDTAVFGL 206 >yciO [J] COG0009 Putative translation factor (SUA5) Eco Escherichia coli K12 Length = 218 Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 153/206 (74%), Gaps = 1/206 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF IHPDNPQ RLI QA +I+ KGG++ PTDS YAL C++++K+A+ER+ RIR + Sbjct: 13 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 72 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIG 120 + H+ TL+CRDLSE++ Y+ VDN +RLMK TPG +TFIL+ TKEVPRRL RKTIG Sbjct: 73 DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG 132 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEELPLTHAEDIRSHLEKRIELVIDSGACSLE 180 +RVP N IA LLE LG+P+L T+L+LP E + E+I+ LEK+++L+I G + Sbjct: 133 MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK 192 Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIF 206 PTTVIDLTDD PV+VR+G GD F Sbjct: 193 PTTVIDLTDD-TPVVVREGVGDVKPF 217 >ZyciO [J] COG0009 Putative translation factor (SUA5) EcZ Escherichia coli O157:H7 EDL933 Length = 218 Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 117/206 (56%), Positives = 153/206 (74%), Gaps = 1/206 (0%) Query: 1 MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60 MSQFF IHPDNPQ RLI QA +I+ KGG++ PTDS YAL C++++K+A+ER+ RIR + Sbjct: 13 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 72 Query: 61 EKHHLTLLCRDLSEIAQYAKVDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIG 120 + H+ TL+CRDLSE++ Y+ VDN +RLMK TPG +TFIL+ TKEVPRRL RKTIG Sbjct: 73 DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG 132 Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEELPLTHAEDIRSHLEKRIELVIDSGACSLE 180 +RVP N IA LLE LG+P+L T+L+LP E + E+I+ LEK+++L+I G + Sbjct: 133 MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK 192 Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIF 206 PTTVIDLTDD PV+VR+G GD F Sbjct: 193 PTTVIDLTDD-TPVVVREGVGDVKPF 217