BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3208.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas ae...   146   1e-35
RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia sol...   142   2e-34
mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium...   140   7e-34
SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobiu...   134   5e-32
BMEI1429 [R] COG2351 Transthyretin-like protein Bme Brucella mel...   134   5e-32

>PA1518 [R] COG2351 Transthyretin-like protein Pae Pseudomonas aeruginosa
          Length = 126

 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/117 (56%), Positives = 88/117 (75%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVEQGGKRLLKQAVTNDDGRCDEPLLAGDTLQVGK 60
           MG+L+THVLD   G PG G+K+ LY VE     L+   +TN DGRCD+P+L G+  + G 
Sbjct: 10  MGRLTTHVLDSAHGCPGHGIKIELYRVEGQQLELIATTLTNHDGRCDQPVLQGEDFRPGV 69

Query: 61  YELVFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
           Y+LVF AGDY+ A+GV LP+P F+D+VV+ FGIA A  +YHVPL++SP++YSTYRGS
Sbjct: 70  YQLVFNAGDYYRARGVQLPEPAFLDQVVLRFGIASADDHYHVPLLISPYSYSTYRGS 126


>RSc2116 [R] COG2351 Transthyretin-like protein Rso Ralstonia solanacearum
          Length = 117

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 83/117 (70%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVEQGGKRLLKQAVTNDDGRCDEPLLAGDTLQVGK 60
           MG+L+THVLD   G PG  + + L+ +    ++ +K   TN DGRC+ PLL G+ LQ G 
Sbjct: 1   MGRLTTHVLDTAAGTPGKDLAITLFKIVNNLRQPIKTVRTNHDGRCEAPLLEGEALQAGI 60

Query: 61  YELVFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
           YEL FA GDY+ A GVSLP P F+D V + FG+ADA  +YHVPL+VSPW+YSTYRGS
Sbjct: 61  YELDFAVGDYYRAAGVSLPDPAFLDVVTLRFGVADAGAHYHVPLLVSPWSYSTYRGS 117


>mlr5133 [R] COG2351 Transthyretin-like protein Mlo Mesorhizobium loti
          Length = 124

 Score =  140 bits (353), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 66/116 (56%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 2   GKLSTHVLDITKGKPGAGVKLALYAVEQGGKRLLKQAVTNDDGRCDEPLLAGDTLQVGKY 61
           G+L+THVLD   GKP AG+ +ALY ++   +  LK   TN DGRCD  LLAG   + G+Y
Sbjct: 10  GRLTTHVLDTATGKPAAGLSIALYRLDGSARTHLKTVATNADGRCDAALLAGAEFRAGEY 69

Query: 62  ELVFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
           ELVFAAGDY   QG  LP+P F+D V I FG+A+A  +YHVPL++SP+ YSTYRGS
Sbjct: 70  ELVFAAGDYLRGQGTKLPEPAFLDSVPIRFGMAEAV-HYHVPLLISPYGYSTYRGS 124


>SMb20872 [R] COG2351 Transthyretin-like protein Sme Sinorhizobium meliloti
          Length = 129

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 80/116 (68%)

Query: 2   GKLSTHVLDITKGKPGAGVKLALYAVEQGGKRLLKQAVTNDDGRCDEPLLAGDTLQVGKY 61
           G+L+THVLD   G+P  G+K+ LY +E   + L++   TN DGR D PL+ G     G Y
Sbjct: 14  GRLTTHVLDTALGRPAHGLKIDLYRLEGDARHLIRTVHTNSDGRVDGPLMEGAGFATGTY 73

Query: 62  ELVFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
           ELVF AGDYF + GV LP P F++ V + FGIADA  +YHVPL++SP+ YSTYRGS
Sbjct: 74  ELVFHAGDYFRSAGVKLPDPAFLELVPLRFGIADADSHYHVPLLLSPYGYSTYRGS 129


>BMEI1429 [R] COG2351 Transthyretin-like protein Bme Brucella melitensis
          Length = 123

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 79/118 (66%), Gaps = 1/118 (0%)

Query: 1   MGKLSTHVLDITKGKPGAGVKLALYAVEQGGK-RLLKQAVTNDDGRCDEPLLAGDTLQVG 59
           MGKLSTHVLD   G P A +++ LY +   G   LLK+ VTN DGR D PLL+GD ++ G
Sbjct: 6   MGKLSTHVLDTAHGTPAAAMRVELYRIAASGTPELLKRVVTNLDGRTDAPLLSGDEMRTG 65

Query: 60  KYELVFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
            YEL F   +YF  +G  L    F+D + I FGIAD   NYHVPL+VSPW+YSTYRGS
Sbjct: 66  IYELQFHVAEYFEGRGAELAHEPFLDLIPIRFGIADEDGNYHVPLLVSPWSYSTYRGS 123