BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3187.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1616 [O] COG2935 Putative arginyl-tRNA Rso Ralstonia solanace... 353 2e-97 PA2618 [O] COG2935 Putative arginyl-tRNA Pae Pseudomonas aeruginosa 211 9e-55 BMEI1199 [O] COG2935 Putative arginyl-tRNA Bme Brucella melitensis 182 6e-46 CC1572 Non COG 177 2e-44 XF1018 [O] COG2935 Putative arginyl-tRNA Xfa Xylella fastidiosa ... 172 6e-43 >RSc1616 [O] COG2935 Putative arginyl-tRNA Rso Ralstonia solanacearum Length = 257 Score = 353 bits (906), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 169/246 (68%), Positives = 198/246 (80%), Gaps = 5/246 (2%) Query: 1 MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIF 60 M+ LK+LP S LQFYATAPY CSYL+ + ARSQVATP+HLINADVYS+LV+ GFRRSGIF Sbjct: 1 MSKLKELPLSALQFYATAPYACSYLEGRLARSQVATPAHLINADVYSKLVRAGFRRSGIF 60 Query: 61 TYRPYCDGCAACTPVRIRVAEFQRNRSQRRAWERNAGLQTLVTNLTYAHEHYELYLRYQC 120 TYRP+CD C ACTP R+ VA F +R+QRRA ER+ L+ LV LTY EHY+LYL YQ Sbjct: 61 TYRPHCDDCHACTPCRVVVAPFVPSRAQRRAAERHQSLEALVAPLTYVEEHYQLYLLYQS 120 Query: 121 ARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFR-----EADGTLRMVSIIDVLNDGLSSV 175 RHAGGGMD DSRDQY QFLLQS+VN+RLVEFR E+ G LRMVS+IDVL DGLSSV Sbjct: 121 VRHAGGGMDHDSRDQYEQFLLQSRVNSRLVEFREPPESESAGRLRMVSMIDVLEDGLSSV 180 Query: 176 YTFFDPDLPAASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNYQPLEALHQG 235 YTF+DP AS+GTYN+LWQI QA+ L++PYVYLGYWI++S+KMAYK +QPLE L G Sbjct: 181 YTFYDPLERKASYGTYNVLWQIAQAQALELPYVYLGYWIEQSRKMAYKAQFQPLELLVNG 240 Query: 236 QWRLLE 241 +WR E Sbjct: 241 EWRRFE 246 >PA2618 [O] COG2935 Putative arginyl-tRNA Pae Pseudomonas aeruginosa Length = 235 Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 107/229 (46%), Positives = 142/229 (62%), Gaps = 1/229 (0%) Query: 9 FSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIFTYRPYCDG 68 + L+FYAT P+PCSYL ++QA + PS ++ +Y+ L + GFRRSG YRP+C Sbjct: 4 LARLKFYATQPHPCSYLPEEQATTLFLDPSQPMDTQLYASLSEVGFRRSGDHLYRPHCQH 63 Query: 69 CAACTPVRIRVAEFQRNRSQRRAWERNAGLQTLVTNLTYAHEHYELYLRYQCARHAGGGM 128 C AC RI VA+F NR QRR +RNA LQ + ++ E+Y+LY RY RHA G M Sbjct: 64 CTACIAARIPVADFSPNRQQRRILKRNAELQVIRKRPSFNEEYYDLYRRYIEQRHADGDM 123 Query: 129 DQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFDPDLPAASF 188 SRDQ+A FL++ EFR G L +++ DVL +GLS+VYTF+DPD S Sbjct: 124 YPPSRDQFATFLVRDLPFCCFFEFR-LHGRLLAIAVTDVLPNGLSAVYTFYDPDEEQRSL 182 Query: 189 GTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNYQPLEALHQGQW 237 G Y ILWQI + +L + VYLGYWIK +KM YKT Y+P+E +W Sbjct: 183 GRYAILWQIAETERLGLQAVYLGYWIKNCRKMNYKTQYRPIELFVNQRW 231 >BMEI1199 [O] COG2935 Putative arginyl-tRNA Bme Brucella melitensis Length = 249 Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 103/255 (40%), Positives = 138/255 (54%), Gaps = 19/255 (7%) Query: 1 MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLIN---ADVYSELVKTGFRRS 57 MTH P + QF+ TAP PC YL+ QQ R +HL+ ++ L + GFRRS Sbjct: 1 MTHQ---PQQSPQFFLTAPSPCPYLEGQQERKVF---THLVGDKANEINDLLTQGGFRRS 54 Query: 58 GIFTYRPYCDGCAACTPVRIRVAEFQRNRSQRRAWERNAGLQTLVTNLTYAHEHYELYLR 117 YRP C+ C AC VRI EF+ R+ RR W +N L V + E Y L+ Sbjct: 55 QNIAYRPACEVCRACISVRILAGEFEMTRNMRRVWSQNRDLIGRVHKAQPSTEQYALFRD 114 Query: 118 YQCARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFR----------EADGTLRMVSIIDV 167 Y ARH GGM + YA + + VNT+++E+R + DG L V++ DV Sbjct: 115 YLDARHRSGGMSDMTVLDYAMMIEDTHVNTQIIEYRRRGPDSFMSAKGDGELIAVALTDV 174 Query: 168 LNDGLSSVYTFFDPDLPAASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNYQ 227 + DGLS VY+FF P + S GTY IL IE+AR +P+VYLGYW++ S+KM YK + Sbjct: 175 MADGLSMVYSFFSPHMQERSLGTYMILDHIERARAAGLPHVYLGYWVEGSRKMQYKIRFT 234 Query: 228 PLEALHQGQWRLLEG 242 P E L W+ EG Sbjct: 235 PQEHLGPRGWQRFEG 249 >CC1572 Non COG Length = 279 Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 131/242 (54%), Gaps = 11/242 (4%) Query: 7 LPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINAD---VYSELVKTGFRRSGIFTYR 63 P L+F+ TAP PC YL ++ R A HL +D V L + GFRRS YR Sbjct: 5 FPTRQLRFFLTAPTPCPYLPGREERKVFA---HLPLSDGPIVNDSLTQVGFRRSQNIAYR 61 Query: 64 PYCDGCAACTPVRIRVAEFQRNRSQRRAWERNAGLQTLVTNLTYAHEHYELYLRYQCARH 123 P C+ C AC R E+ +RS+R+ RN L+ + E +EL RY RH Sbjct: 62 PACETCRACQSARAPATEYILSRSERKILGRNDDLERHLVEAEATLEQFELLRRYLLTRH 121 Query: 124 AGGGMDQDSRDQYAQFLLQSKVNTRLVEFRE-----ADGTLRMVSIIDVLNDGLSSVYTF 178 A GGM + + Y + + V T L+E+R G L ++DVL DGLS VY+F Sbjct: 122 ADGGMAEMTWPDYVAMVEDTAVRTHLIEYRRKSLDRGPGDLVACVLVDVLADGLSLVYSF 181 Query: 179 FDPDLPAASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNYQPLEALHQGQWR 238 ++PD P S G++ IL I QA+Q +PYVYLGYW+ S+KMAYK + PLE L G W Sbjct: 182 YEPDQPRRSLGSFIILDHIVQAQQNALPYVYLGYWVPGSEKMAYKARFSPLEILKPGGWS 241 Query: 239 LL 240 L+ Sbjct: 242 LM 243 >XF1018 [O] COG2935 Putative arginyl-tRNA Xfa Xylella fastidiosa 9a5c Length = 254 Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 125/236 (52%), Gaps = 5/236 (2%) Query: 8 PFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIFTYRPYCD 67 P LQ + T +PC Y D+ A V P+ +Y + + GFRRSG YRP+C+ Sbjct: 7 PHDDLQLFKTNLHPCGYWPDRWASDLVMDPNDPRLGAIYPQALAWGFRRSGNLLYRPHCE 66 Query: 68 GCAACTPVRIRVAEFQRNRSQRRAWERNAGLQTLVTNLTYAHEHYELYLRYQCARHAGGG 127 C AC PVR+ V F NRSQRR RNA L T + E LY RY RH GG Sbjct: 67 HCNACVPVRVNVNAFVPNRSQRRCLARNATLVTRIVPAERNAEQLSLYRRYLHQRHPDGG 126 Query: 128 MDQDSRDQYAQFLLQSKVNTRLVEFRE-----ADGTLRMVSIIDVLNDGLSSVYTFFDPD 182 MD ++ QFL+ R +E RE G L V++ D+ + LS+VYTF++P+ Sbjct: 127 MDGHGAIEFDQFLIGPWGYGRFMEIREPATNGTPGQLLAVAVTDLTHQALSAVYTFYEPN 186 Query: 183 LPAASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNYQPLEALHQGQWR 238 A GT IL QI A++ PY+YLGYWIK+ KM YK +Q LE +WR Sbjct: 187 AAARGLGTLAILHQIHWAQREQRPYLYLGYWIKDHFKMDYKRRFQKLEIYDGYRWR 242