BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3178.p (542 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 467 e-131 RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 347 3e-95 RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 345 2e-94 RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 339 8e-93 RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 339 8e-93 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust. Identities = 260/542 (47%), Positives = 364/542 (67%) Query: 1 MRFQDLSIGTRLGIAFATLVLIIIGIVILGLSRLSEVNESLDHVVNDRYKKVAIINTISS 60 MR D+ IG RLG AFA +V ++IGI +G+ RL + N + +V++RY +A+ N I + Sbjct: 1 MRISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKN 60 Query: 61 NTDDIALSVRNRLISSNRTEAAQEKVEADRLLAENTKLYEQLTQLIIRPKAKSQLERVIQ 120 N + N L+ + + + + + N + Y +L +L+ + K+ + Sbjct: 61 NGYKANGILSNLLLVTTPEQKTKYMSDYAAIRQANAQAYGRLEKLLTTDQGKALFKEQFD 120 Query: 121 ARSEYSAVMLEVIRLQELDDRDSAVELLRTKMAPLQKKYMKELDGLSDTQQELMNQAVVE 180 ARS Y A + + L + D+ A L + M+ LQ +Y +D + D Q M V E Sbjct: 121 ARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSE 180 Query: 181 AKENYENTRLTMVASGLVASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTSEIQQS 240 A N ++ M+ ++A++ A+ I+R IT P+N A+ +AE VA G+LT ++ Sbjct: 181 AAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHLLEVD 240 Query: 241 QKDETGRLLQALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLEE 300 +DE GRLL AL M + L IV +VR GTD++ AS+++A+GN+DLSSRTE+QASSLEE Sbjct: 241 TQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASSLEE 300 Query: 301 TASSMEELTSTVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVDI 360 TA++ME+LTSTVKQNA+++++AS LA ++S +A +GG V++ +QTMS+IN SS KIVDI Sbjct: 301 TAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQNS 420 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA AAKEIK LI++S Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIEDS 420 Query: 421 VDKVSSGSELVAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQVT 480 V VS+G+ V EAGQ + +VVA IQ VTNIV+EIS ++REQSDGIEQ+N+A+ QMD+ T Sbjct: 421 VGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQMDKAT 480 Query: 481 QQNAALVEEAAAAAQSLQDQAKRLSTVVSVFRIDALDHPQAPAAKVVPHSTAGAKREQQR 540 Q+NA+LVEE+A AAQ+LQDQA +L+ +VS F++ A + AA+ S A Q + Sbjct: 481 QENASLVEESATAAQALQDQANQLADMVSTFKLHADLSGRGRAAQGEAGSVAHVAWSQAQ 540 Query: 541 TL 542 TL Sbjct: 541 TL 542 >RSp1406 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 608 Score = 347 bits (891), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 206/368 (55%), Positives = 261/368 (70%), Gaps = 1/368 (0%) Query: 152 MAPLQKKYMKELDGLSDTQQELMNQAVVEAKENYENTRLTMVASGLVASIFAVLVALLIS 211 M L + ++ LS Q E+ + + ++ A LV + L+ + Sbjct: 152 MPALYRPLGDKVTALSRMQMEIARASYEAGQREHDGLSALTAALLLVGIVGGGLLTWSLR 211 Query: 212 RGITSPLNQALSVAEQVAAGDLTSEIQQSQKDETGRLLQALAVMNQKLKDIVKEVRHGTD 271 R IT PLN+A+ AE + GDLT I + DETGR+L AL M + L+ +V +VR G+D Sbjct: 212 RSITVPLNRAIEQAEHITRGDLTHAIHVDRADETGRMLLALQRMQESLQGMVGQVRTGSD 271 Query: 272 SMVTASTQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNAEHSRKASELALHSSQ 331 ++ +A+ QIA GN DLS RTE+QASSLEETASSME+LT VKQNA+ +R+AS LA+++S Sbjct: 272 AIASATQQIAAGNADLSQRTEQQASSLEETASSMEQLTGMVKQNADSARQASTLAVNASD 331 Query: 332 IAKQGGTVVEKVVQTMSSINDSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRG 391 IA +GG VV +VV+TM+ I+DSS KI DII VI+GIAFQTNILALNAAVEAARAGEQGRG Sbjct: 332 IAVKGGEVVGRVVETMAGIHDSSRKIADIIGVIEGIAFQTNILALNAAVEAARAGEQGRG 391 Query: 392 FAVVASEVRVLAQRSATAAKEIKELIQNSVDKVSSGSELVAEAGQTMNEVVASIQQVTNI 451 FAVVA EVR LAQRSA AAKEIK LI +SV +V SG+ LVAEAG ++EVV ++++VT I Sbjct: 392 FAVVAGEVRSLAQRSAGAAKEIKTLISDSVGRVESGTTLVAEAGTVIDEVVVAVKRVTGI 451 Query: 452 VTEISEATREQSDGIEQVNQAVMQMDQVTQQNAALVEEAAAAAQSLQDQAKRLSTVVSVF 511 + EIS A+ QS+GI QVNQAV QMD+ TQQNAALVE+AAAAA SLQ+QA L V+ F Sbjct: 452 MGEISAASDAQSEGIAQVNQAVTQMDEATQQNAALVEQAAAAAMSLQEQADGLRGTVAAF 511 Query: 512 RIDALDHP 519 R A D P Sbjct: 512 RTRA-DAP 518 >RSp1209 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 524 Score = 345 bits (885), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 223/429 (51%), Positives = 291/429 (67%), Gaps = 29/429 (6%) Query: 102 LTQLIIRPKAKSQLERVIQARSEYSAVMLE-VIRLQELDDRDSAVELLRTKMAPLQKKYM 160 TQL I ++QL+ AR+ + LE I E D + +L T++ L Y Sbjct: 105 FTQLPIPDADRAQLQAADAARARFVKTALEPAITALERSDLTTYRDLNTTQVPQLFAVYD 164 Query: 161 KELDGLSDTQQELMNQAVVEAKENYENTRLTMVASGLVASIFAVLVAL------------ 208 L Q +V+A+ Y R S AS++ L Sbjct: 165 AAL------------QPLVKARFAYGQARFDRSQSRYAASVWLSGGLLLAALVLSVVARG 212 Query: 209 LISRGITSPLNQALSVAEQVAAGDLTSEIQQ----SQKDETGRLLQALAVMNQKLKDIVK 264 ++ R + PL +A+ V E++AAGDL + + + ++DET RL+ A+A M L+ +V Sbjct: 213 VLGRTLVRPLERAIHVFERMAAGDLATRMDEPTRAGRRDETARLMHAVASMQSSLQKMVG 272 Query: 265 EVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNAEHSRKASE 324 +VR G+DS+ +A+ QIA GN DLS RTE+QASSLEETASSMEELTS VKQNA+++R+AS Sbjct: 273 QVRTGSDSIASATKQIAAGNADLSQRTEQQASSLEETASSMEELTSIVKQNADNARQAST 332 Query: 325 LALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVDIISVIDGIAFQTNILALNAAVEAAR 384 LA+++S +A +GG VV +VV+TM+ IN SS KI DII VI+GIAFQTNILALNAAVEAAR Sbjct: 333 LAVNASDVAVKGGEVVGRVVETMAGINGSSKKIADIIGVIEGIAFQTNILALNAAVEAAR 392 Query: 385 AGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQNSVDKVSSGSELVAEAGQTMNEVVAS 444 AGEQGRGFAVVA EVR LAQRSA AAKEIKELI +SVD+V +GS+LVAEAG ++EVV + Sbjct: 393 AGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVDRVQNGSKLVAEAGTVIDEVVVA 452 Query: 445 IQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQVTQQNAALVEEAAAAAQSLQDQAKRL 504 +++VT+I+ EIS A+ EQS GIEQVNQAV QMD+VTQQNAALVE+AAAAA+SL+ QA+ L Sbjct: 453 VKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEQAAAAAESLEAQAEAL 512 Query: 505 STVVSVFRI 513 VS FR+ Sbjct: 513 RQAVSAFRV 521 >RSp0303 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 515 Score = 339 bits (870), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 210/385 (54%), Positives = 279/385 (72%), Gaps = 18/385 (4%) Query: 140 DRDSAVELLRTKMAPLQKKYMKELDGLSDTQQELMNQAVVEAKENYENTRLTMVASGLVA 199 D+D+A +L ++ + Y + D L+ Q E+ + A+ EA +++ GLV Sbjct: 140 DKDAARQLAVEQIPYNFRTYASQSDRLNAIQTEV-SAALYEASQSF--------FKGLVW 190 Query: 200 SIFAVL---------VALLISRGITSPLNQALSVAEQVAAGDLTSEIQQSQKDETGRLLQ 250 + V+ L++SR I+ PL + L ++A+G+LT++++ +DE G L++ Sbjct: 191 TFVIVIAAGLALAAGCYLILSRAISLPLAEMLVHFREIASGNLTTDVRVRSRDEMGVLME 250 Query: 251 ALAVMNQKLKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLEETASSMEELTS 310 L M KLK V VRHG++S+ +A+ QIA GN +LS RTEEQASSLEETASSMEELTS Sbjct: 251 GLQQMQDKLKATVLTVRHGSESIASATQQIAAGNTNLSQRTEEQASSLEETASSMEELTS 310 Query: 311 TVKQNAEHSRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVDIISVIDGIAFQ 370 VKQNA+++R+AS LA ++S IA QGG VV+ VV TM+ I++SS KI DII+VI+GIAFQ Sbjct: 311 IVKQNADNARQASTLAENASGIAMQGGAVVQDVVTTMAQISESSRKITDIIAVIEGIAFQ 370 Query: 371 TNILALNAAVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQNSVDKVSSGSEL 430 TNILALNAAVEAARAGEQGRGFAVVA EVR LAQRSA AAKEIK LI++S +V SGS L Sbjct: 371 TNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSAGAAKEIKSLIEDSATRVESGSSL 430 Query: 431 VAEAGQTMNEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQVTQQNAALVEEA 490 VA AG+TM+E+V ++++VT+I+ EIS + EQS GIEQ+N+AV QMD VTQQNAALVE+A Sbjct: 431 VARAGKTMDEIVVAVKRVTDIMGEISAGSAEQSTGIEQINEAVTQMDDVTQQNAALVEQA 490 Query: 491 AAAAQSLQDQAKRLSTVVSVFRIDA 515 AAAAQ+L++QA L VSVFR+ A Sbjct: 491 AAAAQALEEQADELRRAVSVFRVAA 515 >RSp0507 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 600 Score = 339 bits (870), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 208/375 (55%), Positives = 272/375 (72%), Gaps = 2/375 (0%) Query: 141 RDSAV--ELLRTKMAPLQKKYMKELDGLSDTQQELMNQAVVEAKENYENTRLTMVASGLV 198 RD+A + + T + P+ +D L Q E A A +N ++ + +V Sbjct: 139 RDAAAVDKAVMTVIPPMFVALSAAVDALDRNQAEQAKAAYEGAVTRSQNFLWLIIGAIVV 198 Query: 199 ASIFAVLVALLISRGITSPLNQALSVAEQVAAGDLTSEIQQSQKDETGRLLQALAVMNQK 258 + AV A + R I+ PL++ L +++ G+LT +I + +DE G L + L M + Sbjct: 199 GILSAVACAFGLDRAISVPLSRMLGSFGEISRGNLTEQIVVTSQDEMGALTRGLQDMQRG 258 Query: 259 LKDIVKEVRHGTDSMVTASTQIATGNLDLSSRTEEQASSLEETASSMEELTSTVKQNAEH 318 L ++ +R G+DS+ +A+ QIA GN+DLS RTEEQASSLEETASSMEELTS VKQNA++ Sbjct: 259 LIRTIETMRGGSDSIASATKQIAAGNMDLSQRTEEQASSLEETASSMEELTSIVKQNADN 318 Query: 319 SRKASELALHSSQIAKQGGTVVEKVVQTMSSINDSSNKIVDIISVIDGIAFQTNILALNA 378 +R+AS LA+++S IA +GG VV +VV+TM+ INDSS KI DII VI+GIAFQTNILALNA Sbjct: 319 ARQASTLAVNASDIAVKGGEVVGRVVETMAGINDSSKKIADIIGVIEGIAFQTNILALNA 378 Query: 379 AVEAARAGEQGRGFAVVASEVRVLAQRSATAAKEIKELIQNSVDKVSSGSELVAEAGQTM 438 AVEAARAGEQGRGFAVVA EVR LAQRSA AAKEIKELI +SV +V +G+ LVAEAG + Sbjct: 379 AVEAARAGEQGRGFAVVAGEVRSLAQRSAGAAKEIKELISDSVGRVENGTTLVAEAGTVI 438 Query: 439 NEVVASIQQVTNIVTEISEATREQSDGIEQVNQAVMQMDQVTQQNAALVEEAAAAAQSLQ 498 +EVV ++++VT+I+ EIS A+ EQS GIEQVNQAV QMD+VTQQNAALVEEAAAAAQSL+ Sbjct: 439 DEVVVAVKRVTDIMGEISAASDEQSSGIEQVNQAVNQMDEVTQQNAALVEEAAAAAQSLE 498 Query: 499 DQAKRLSTVVSVFRI 513 +QA+ L V+ FR+ Sbjct: 499 EQARLLRETVASFRL 513