BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3172.p (385 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr2770 Non COG 384 e-106 PA4355 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aer... 359 7e-99 YPO0798 [G] COG2814 Arabinose efflux permease Ype Yersinia pestis 346 5e-95 mlr4084 Non COG 312 1e-84 AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium ... 296 7e-80 >mlr2770 Non COG Length = 391 Score = 384 bits (986), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/386 (54%), Positives = 272/386 (70%), Gaps = 3/386 (0%) Query: 1 MNWPLFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAI 60 M P+ ALA+A+F IGTTEFVIMGLLP+VA DL+VS P+AG+LV+GYALGV GAPI+A+ Sbjct: 1 MPLPILALAIASFCIGTTEFVIMGLLPEVAADLRVSIPSAGLLVTGYALGVVFGAPIVAM 60 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELV 120 TA PRK LVGL F++GN+ CA+AP+Y LM ARV TAF H AFFGIGSVVAA LV Sbjct: 61 ATAHLPRKPVLVGLAASFVVGNLFCAIAPDYWTLMAARVFTAFGHGAFFGIGSVVAASLV 120 Query: 121 PPQKRAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR 180 P KRA A+ALMF GLT++NILGVP GTA G GWR+TF AV GIG ++ + ++P Sbjct: 121 PRNKRASAMALMFAGLTLSNILGVPAGTALGEAFGWRSTFIAVVGIGLISVAAIAWLVPS 180 Query: 181 HLPM-QGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESW 239 + GG + E R + +V L++L ++LAS S+F+V TYI L +V+G S +W Sbjct: 181 DVAEPSGGGLRGELRVLGRLQVWLAMLIASLASASLFAVFTYIKPYLTDVSGLSTSAVTW 240 Query: 240 VLLLFGAGITVGGLVGGKLADWKLMPVMCAVFLCIAIV-LGLFSFTSHYKWPTLATMFAW 298 VLLLFGAG+T+G ++GG+LADWKLMP + L +A++ +G F + + +F W Sbjct: 241 VLLLFGAGMTIGNIIGGRLADWKLMPTVIGTLLLMAVLFIGFMQFGAIAS-VAIGIVFLW 299 Query: 299 GAFAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDLPL 358 G F VVP QIRV++ A PNLA+TLNQGAFN+GNASGAWIGG+A+SAG+ LPL Sbjct: 300 GLLIFVVVPPLQIRVVEAASEGPNLAATLNQGAFNVGNASGAWIGGVALSAGVSYAHLPL 359 Query: 359 IGSVFALLGLATVAFSASLDKRVRAP 384 +G+V ALL + S +LD+R P Sbjct: 360 VGAVLALLAVTVAVLSQALDRRAPVP 385 >PA4355 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aeruginosa Length = 388 Score = 359 bits (921), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 200/353 (56%), Positives = 253/353 (71%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAK 64 L LA++AF IGTTEFVIMGLLP VAGDL+VS P+AG L+SGYA VA GAP++A+ TA+ Sbjct: 5 LLVLALSAFAIGTTEFVIMGLLPQVAGDLRVSIPSAGWLISGYAFAVAFGAPLMAMATAR 64 Query: 65 WPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQK 124 RK+AL+ LM +FI+GN+LCA+A NY LM+AR+VTA CH AFFGIGSVVAA LV P + Sbjct: 65 LERKKALLALMGIFIVGNLLCAVAANYGLLMLARIVTALCHGAFFGIGSVVAASLVAPNR 124 Query: 125 RAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPRHLPM 184 RA AVALMFTGLT+AN+LGVPLGTA G AGWRATFW VT IG +A L +LP Sbjct: 125 RASAVALMFTGLTLANVLGVPLGTALGQEAGWRATFWVVTLIGVVAFVGLARVLPNDREE 184 Query: 185 QGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLLLF 244 + ++ QE ++ + + L+L T+ L + SMF++ TY+A +L VTG S + +W LLL Sbjct: 185 EKVDLRQEMSALKNPSLWLALGTTVLFAASMFALFTYVAPLLGEVTGVSPRGVTWTLLLI 244 Query: 245 GAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGAFAFA 304 G G+TVG ++GG+LADW+L M AVF +A+V LFS+TS P T+F W A AFA Sbjct: 245 GVGLTVGNVIGGRLADWRLGTTMAAVFAAMALVSALFSWTSQALLPAEITLFFWAAAAFA 304 Query: 305 VVPGAQIRVLDTARGAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDLP 357 VP Q+ V+ APNL +TLN GAFN+GNA GAW+GG I GL LT +P Sbjct: 305 AVPALQVNVVRVGHAAPNLVATLNIGAFNVGNALGAWVGGSVIDHGLGLTRVP 357 >YPO0798 [G] COG2814 Arabinose efflux permease Ype Yersinia pestis Length = 386 Score = 346 bits (888), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 187/337 (55%), Positives = 237/337 (70%) Query: 15 IGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAKWPRKQALVGL 74 IGTTEFVIMGLLP VAGDL +S P AG L+SGYALGVA GAPI+A+LTAK PRK+ L+ L Sbjct: 15 IGTTEFVIMGLLPQVAGDLHISIPTAGWLISGYALGVAIGAPIMAVLTAKLPRKKTLLLL 74 Query: 75 MCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQKRAQAVALMFT 134 M +FI+GN++CA+A +Y+FLM ARV+TA CH AFFGIG+VVAA LV P +RA AVALMFT Sbjct: 75 MVIFIIGNLMCALAYSYDFLMFARVITALCHGAFFGIGAVVAANLVAPNRRASAVALMFT 134 Query: 135 GLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPRHLPMQGGNIFQEFR 194 GLT+AN+LGVPLGTA G GWR+TFW V+ IG + L++ LP + +E Sbjct: 135 GLTLANVLGVPLGTALGQAFGWRSTFWVVSVIGLFSLAALYSKLPSSSEEAPTELRKEIA 194 Query: 195 SIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLLLFGAGITVGGLV 254 ++ + LSLL + + +MF++ TYIA IL VT S SW LLL G G+T+G +V Sbjct: 195 ALRGGGIWLSLLMTVFFAAAMFALFTYIAPILTEVTQVSEHGVSWTLLLMGVGLTLGNIV 254 Query: 255 GGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGAFAFAVVPGAQIRVL 314 GG+LADW+L + FL IA+ LFS+TS+ T+F W A AF+ VP QI V+ Sbjct: 255 GGRLADWRLSVSLTMTFLLIAVFSALFSWTSYSLLAAEVTLFLWSAAAFSAVPALQINVV 314 Query: 315 DTARGAPNLASTLNQGAFNLGNASGAWIGGLAISAGL 351 + APNL STLN AFN+GNA GAW+GG+ I+ GL Sbjct: 315 AYGKKAPNLVSTLNIAAFNVGNALGAWVGGVVIAKGL 351 >mlr4084 Non COG Length = 397 Score = 312 bits (799), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 181/354 (51%), Positives = 232/354 (65%), Gaps = 2/354 (0%) Query: 5 LFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAILTAK 64 L+ALA AFGIG TEFVIMGLL DV+ DL VS AAG L+SGYALGV GAP+L I T Sbjct: 5 LYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTIATGN 64 Query: 65 WPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELVPPQK 124 WPRK L+ LM +F LGN+ CA+AP+Y LM AR++TAF H FFG+GSVVA LV P K Sbjct: 65 WPRKTVLLALMAIFTLGNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLVAPNK 124 Query: 125 RAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR-HLP 183 +A A+ALMFTGLT+ANILGVP GT G GWRATFWAVT +G A ++ ++PR + Sbjct: 125 KASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFWAVTAVGLAAFAVILALVPRSQVA 184 Query: 184 MQGGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESWVLLL 243 + ++ + + T V L L T+ L +F+V TYIA +L ++GF S +LL+ Sbjct: 185 PEKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSPILLV 244 Query: 244 FGAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWGAFAF 303 FG G+ G L GGK+AD L+P + + +A+VL SF H + + + GA AF Sbjct: 245 FGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLGAAAF 304 Query: 304 AVVPGAQIRVLDTARGA-PNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTDL 356 A V Q+ VLD A+GA +LAS+ N AFNLGNA+GAW+GG I+ GL L L Sbjct: 305 ATVAPLQMWVLDKAQGAGQSLASSFNIAAFNLGNAAGAWLGGAVIAHGLGLGSL 358 >AGl1145 [G] COG2814 Arabinose efflux permease Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 431 Score = 296 bits (757), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 172/385 (44%), Positives = 241/385 (62%), Gaps = 5/385 (1%) Query: 1 MNWPLFALAVAAFGIGTTEFVIMGLLPDVAGDLKVSAPAAGMLVSGYALGVAAGAPILAI 60 M +FAL +AA+ IGTTEFVI+GLLP VA DL ++ P AG++VS YALGV GAPIL Sbjct: 39 MPLAIFALTIAAYAIGTTEFVIVGLLPTVANDLHITLPLAGLIVSVYALGVTFGAPILTA 98 Query: 61 LTAKWPRKQALVGLMCLFILGNVLCAMAPNYNFLMVARVVTAFCHAAFFGIGSVVAAELV 120 LT + RK L+GLM LFI+GN A++P+Y L+VARV+ AF H FF +G+ +AA+LV Sbjct: 99 LTGRIERKPLLLGLMALFIVGNTAAALSPSYEMLLVARVIAAFAHGVFFSVGATIAADLV 158 Query: 121 PPQKRAQAVALMFTGLTVANILGVPLGTAFGHVAGWRATFWAVTGIGALAATMLWTMLPR 180 P +RA A+A+MF GLTVA + GVP+GT G + GWRATFWAV +G +A + +LP Sbjct: 159 PENRRASAIAMMFMGLTVAIVTGVPIGTYIGQIFGWRATFWAVGALGIVAFVAIAVLLPN 218 Query: 181 HLPMQ-GGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLNVTGFSAQEESW 239 L +IF + R + R+ + + L F T++A IL +VTGFS S Sbjct: 219 TLKKAPPASIFDQVRVLGSGRLLIVFAMTALGYGGTFVAFTFLAPILQDVTGFSESSVSL 278 Query: 240 VLLLFGAGITVGGLVGGKLADWKLMPVMCAVFLCIAIVLGLFSFTSHYKWPTLATMFAWG 299 +L+L+G I G + GGK+A+ + + +F AIVL +FSFT+ TL T+ A G Sbjct: 279 ILVLYGIAIAAGNIGGGKIANHNPVKALIGLFALQAIVLVIFSFTAVSPVLTLITLVALG 338 Query: 300 AFAFAVVPGAQIRVLDTAR----GAPNLASTLNQGAFNLGNASGAWIGGLAISAGLPLTD 355 +FA VPG Q+ V+ A+ GA ++AS LN AFNLG A GAW+GG+ + + + L Sbjct: 339 FLSFANVPGLQLYVVQLAKEHRPGAVDVASALNIAAFNLGIALGAWLGGVVVESPMGLGA 398 Query: 356 LPLIGSVFALLGLATVAFSASLDKR 380 P +G++ + L +S +LD+R Sbjct: 399 TPWVGAILVAVALLLTIWSGALDRR 423