BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3159.p         (64 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1440 [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3 Vch V...    37   0.011
RSc1278 [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3 Rso ...    30   1.1  
PH1192 Non COG                                                         30   1.1  
PA1205 [R] COG1741 Pirin-related protein Pae Pseudomonas aeruginosa    28   6.3  

>VC1440 [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3 Vch Vibrio
          cholerae
          Length = 54

 Score = 37.0 bits (84), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 23/37 (62%)

Query: 10 SLITLISFITFAGILWWTYVGHKPADFKQAEMIPFAD 46
          S+ T++ FI F G++WW Y   + A F +A  + FAD
Sbjct: 8  SIWTIVLFICFIGVVWWAYGKKRKARFDEAANLIFAD 44


>RSc1278 [O] COG4736 Cbb3-type cytochrome oxidase, subunit 3 Rso Ralstonia
          solanacearum
          Length = 60

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 10 SLITLISFITFAGILWWTYVGHKPADFKQAEMIPFADGDIGQPAAAADD 58
          ++ T +  + F  I WW Y  H+     ++ M+PF   D  + AA   D
Sbjct: 6  AIATAVFLMLFIAITWWAYSAHRRHANAESAMLPFLLPDEAEVAAGRMD 54


>PH1192 Non COG
          Length = 267

 Score = 30.4 bits (67), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 9  RSLITLISFITFAGILWWTYVGHKPADF 36
          R +ITL+  + F  I WW Y GH    F
Sbjct: 6  RQIITLVLIVLFGAIAWWAY-GHHNGGF 32


>PA1205 [R] COG1741 Pirin-related protein Pae Pseudomonas aeruginosa
          Length = 315

 Score = 27.7 bits (60), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 2   IEMITDPRSLITLISFITFAG--ILWWTYVGHKPADFKQAE 40
           +++  DP + + L+    F     +WW +VGH   +  +A+
Sbjct: 242 LQLQLDPGARVLLLGGAPFGAEIFMWWNFVGHSKGEIARAQ 282