BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3156.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMA1667 Non COG                                                        87   2e-17
PA1550 [S] COG3198 Uncharacterized protein conserved in bacteria...    79   7e-15
VC1438 [S] COG3198 Uncharacterized protein conserved in bacteria...    64   2e-10
NMB1453 [S] COG3198 Uncharacterized protein conserved in bacteri...    63   4e-10
RSc1281 Non COG                                                        55   8e-08

>NMA1667 Non COG
          Length = 182

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 86/172 (50%), Gaps = 24/172 (13%)

Query: 13  PWYRHRWPWLLMSGPA-VVVAGIFTAWLAISRADALVADDYYKQGKAINKDLRRDHEAQR 71
           PWY+H WPW+LM+GP  VV+A +   ++A   A  LV DDYYK GK I+  L RD EA R
Sbjct: 9   PWYKHVWPWILMAGPIFVVIASVAMFFVAQQHATDLVTDDYYKDGKHIDIQLHRDEEAVR 68

Query: 72  --LGASIGIAYDPAAA--VLRGRLQMRQTPAAGEEGRTLILNLVHPTQPAKDRTLMVQTA 127
             +G  + I+ D  AA   + G    +Q          L L L+HPT+ A D+T+ ++  
Sbjct: 69  RHIGVQVLISPDMNAAKVFVGGEFDGKQ---------PLNLLLMHPTRKADDQTVALKPV 119

Query: 128 ADGSFSLSLPEMEQA--------RWRLVAEDGSHLWRLHGNWAWPQQRSIEM 171
             GS      E E           W +  ED + +WR+   W   Q  ++++
Sbjct: 120 --GSAQNGRAEYEAVFKTLSPTNHWYVRVEDAAGVWRVENKWITSQGNAVDL 169


>PA1550 [S] COG3198 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 179

 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 13  PWYRHRWPWLLMSGPAV-VVAGIFTAWLAISRADALVADDYYKQGKAINKDLRRDHEAQR 71
           PWY+H W W +++  A  VV G+    +A+   D LV D+YY+ GK IN+ L R++ A R
Sbjct: 9   PWYKHFWAWFIVALLATSVVLGLSLVTIAVRNQDTLVTDNYYEAGKGINRSLERENLAVR 68

Query: 72  LGASIGIAYDPAAAVLRGRLQMRQTPAAGEEGRTLILNLVHPTQPAKDRTL-MVQTAADG 130
           L     +  D     +  RL     P        L LNL+ PTQP KDR + ++++ +D 
Sbjct: 69  LQVHAKVKVDDLTGEVEVRLTGNSRPDR------LTLNLISPTQPEKDRRVELLRSNSDR 122

Query: 131 S-FSLSLPEMEQAR--WRLVAEDGSHLWRLHGNWAWPQQRSIEMNAEAYAPAE 180
             +   L +  + R    L+ ++GS  WRL           +E+  E    AE
Sbjct: 123 ERYVGQLTDAVEGRRFVELLGQEGSGQWRLFEEEVVSPTVVMELGDEPLQGAE 175


>VC1438 [S] COG3198 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 158

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 13  PWYRHRWPWLLMSGPAVVVAGIFTAWLAI-SRADALVADDYYKQGKAINKDLRRDHEAQR 71
           PWY+  WPW L+  P  VV       +   + + +LV +DYYK+GK IN DL + + A+ 
Sbjct: 4   PWYKQFWPWFLIILPLTVVIWTVVTVIVFANNSVSLVTEDYYKKGKGINIDLTKINVAKE 63

Query: 72  LGASIGIAYDPAAAVLR-GRLQMRQTPAAGEEGRTLILNLVHPTQPAKDRTLMVQTAADG 130
           LG +  +  + +  ++   + Q+   PA             H T P +D + ++   A G
Sbjct: 64  LGLNATVHSEGSTVIIEFDKGQLAHFPAIQAM-------FAHRTLPDRDFSQLITADAKG 116

Query: 131 SFSLSLPEMEQARW--RLVAEDGSHLWRLHGNWAWPQQRSIEMN 172
            + L+L    Q  W   L   DG   W + G   +P   +  MN
Sbjct: 117 IYRLNLENELQGPWFIELTPHDGQ--WLVQGRVTFPSSPTALMN 158


>NMB1453 [S] COG3198 Uncharacterized protein conserved in bacteria Nme
           Neisseria meningitidis MC58
          Length = 163

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 24/161 (14%)

Query: 24  MSGPA-VVVAGIFTAWLAISRADALVADDYYKQGKAINKDLRRDHEAQR--LGASIGIAY 80
           M+GP  VV+A +   ++A   A  LV DDYYK GK I+  L RD EA R  +G  + I+ 
Sbjct: 1   MAGPIFVVIASVAMFFVAQQHATDLVTDDYYKDGKHIDIQLHRDEEAVRRHIGVQVLISP 60

Query: 81  DPAAA--VLRGRLQMRQTPAAGEEGRTLILNLVHPTQPAKDRTLMVQTAADGSFSLSLPE 138
           D  AA   + G    +Q          L L L+HPT+ A D+T+ ++    GS      E
Sbjct: 61  DMNAAKVFVGGEFDGKQ---------PLNLLLMHPTRKADDQTVALKPV--GSAQNGRAE 109

Query: 139 MEQA--------RWRLVAEDGSHLWRLHGNWAWPQQRSIEM 171
            E           W +  ED + +WR+   W   Q  ++++
Sbjct: 110 YEAVFKTLSPTNHWYVRVEDAAGVWRVENKWITSQGNAVDL 150


>RSc1281 Non COG
          Length = 76

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 5/76 (6%)

Query: 1  MQTISPKLAAAVPWYRHRWPWLLMSGPAVVVAGI-FTAWLAISRADALVADDYYKQG--- 56
          MQ I P  A A PW+R  WPWLLM+GP   + G   T WLA +  D  + D+  ++G   
Sbjct: 1  MQAIQPSAAQARPWWREPWPWLLMAGPFAAMIGCGVTIWLAATHPDPAIQDNVVRRGLVV 60

Query: 57 -KAINKDLRRDHEAQR 71
           KA++   R  H A R
Sbjct: 61 EKAVSVPARAVHGAAR 76