BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3148.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2725 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   117   9e-27
SMc01908 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu...   115   4e-26
TVN1246 [K] COG1846 Transcriptional regulators Tvo Thermoplasma ...    62   8e-10
BS_ywhA [K] COG1846 Transcriptional regulators Bsu Bacillus subt...    56   3e-08
BH4044 [K] COG1846 Transcriptional regulators Bha Bacillus halod...    55   6e-08

>RSc2725 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 157

 Score =  117 bits (294), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 87/133 (65%)

Query: 15  ALRDFYVRSHRALDKLMAGEGASLSRNKMLGHIERNSPVRAADLVAAFGFAPRTITEAID 74
           ALRDFY+RS   LD L+A +G S +R K++  I     VR+ DL+ AFG APRT+TEA+D
Sbjct: 16  ALRDFYIRSQHVLDTLLAEKGISWARMKLIYFIRHEGSVRSVDLMRAFGHAPRTVTEAVD 75

Query: 75  GLERDGLVLRSADTHDRRVKYIALTAAGKEVLRASEPVKKTFIDGLFTVLNEEEISALTT 134
            LERDGLV R  D  DRR K I+LT AG+ + +++EP+++     +  VL+  E   L  
Sbjct: 76  ALERDGLVERVPDPVDRRAKNISLTRAGEALYQSAEPIRRRLGAEICGVLDPAEQRVLQD 135

Query: 135 VLGKLNARLAQLE 147
           +L +++ RLA +E
Sbjct: 136 MLTRMSQRLAMIE 148


>SMc01908 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 157

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 84/128 (65%)

Query: 12  AAEALRDFYVRSHRALDKLMAGEGASLSRNKMLGHIERNSPVRAADLVAAFGFAPRTITE 71
            ++ L + Y R HR +++ M  EG SL+R+K L  + +  P R+ D+  A  FAPRT+TE
Sbjct: 7   VSDKLFELYHRVHRLVNESMTEEGVSLARSKFLFFLSKLGPCRSTDIACALNFAPRTVTE 66

Query: 72  AIDGLERDGLVLRSADTHDRRVKYIALTAAGKEVLRASEPVKKTFIDGLFTVLNEEEISA 131
           AIDGLERD LV+R  D  DRR K +++T  G+ VL+A+E  +K  I+ +F+ L++E++  
Sbjct: 67  AIDGLERDRLVMRKPDPEDRRAKIVSITETGRAVLQAAEHPRKQLIEEIFSALDDEQLDQ 126

Query: 132 LTTVLGKL 139
           L  ++ KL
Sbjct: 127 LYDIVSKL 134


>TVN1246 [K] COG1846 Transcriptional regulators Tvo Thermoplasma volcanium
          Length = 154

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 4/129 (3%)

Query: 19  FYVRSHRALDKLMAGEGASLSRNKMLGHIERNSPVRAADLVAAFGFAPRTITEAIDGLER 78
           +Y ++ R L+K+      S++   ++ H+  N P+  A + +     P  IT  +D +E 
Sbjct: 28  WYKKNERNLNKI----DLSITEFTIMRHLIENGPMSMAAIASLINVTPGWITGVVDKMEE 83

Query: 79  DGLVLRSADTHDRRVKYIALTAAGKEVLRASEPVKKTFIDGLFTVLNEEEISALTTVLGK 138
             LV R+ D+ DRR+  IA+T  G+EV   ++     FI      LNE E+     +L K
Sbjct: 84  KNLVTRNRDSTDRRIIKIAITDRGREVYENAKKNHYAFIRKALAELNENELQQTYVLLQK 143

Query: 139 LNARLAQLE 147
           +   +++LE
Sbjct: 144 MMDDVSKLE 152


>BS_ywhA [K] COG1846 Transcriptional regulators Bsu Bacillus subtilis
          Length = 139

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 59/120 (49%)

Query: 20  YVRSHRALDKLMAGEGASLSRNKMLGHIERNSPVRAADLVAAFGFAPRTITEAIDGLERD 79
           Y++S + LD+    +  +  R  +L  I R+      D++     +P   T A++ LE++
Sbjct: 18  YLKSTKQLDEATVPKHVNNVRGFILRIIYRHGSCTIKDILKEVTLSPSATTTALNHLEQE 77

Query: 80  GLVLRSADTHDRRVKYIALTAAGKEVLRASEPVKKTFIDGLFTVLNEEEISALTTVLGKL 139
           G + RS + +DRR  +I L+ +G+         ++  IDG+F  L  EE      ++ KL
Sbjct: 78  GFIERSRNNNDRRTVWITLSESGRGAAEQMIENRQQLIDGMFERLTAEEKKTFLAIIAKL 137


>BH4044 [K] COG1846 Transcriptional regulators Bha Bacillus halodurans
          Length = 157

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 54/100 (54%)

Query: 40  RNKMLGHIERNSPVRAADLVAAFGFAPRTITEAIDGLERDGLVLRSADTHDRRVKYIALT 99
           R ++L  +     +R ++L +  G   RT+T+ +D LE+D L++R  D  DRR   I LT
Sbjct: 46  RLRVLLAVSEEGEIRMSELASKLGVKARTVTDFVDALEKDQLLVRLPDPKDRRATLIQLT 105

Query: 100 AAGKEVLRASEPVKKTFIDGLFTVLNEEEISALTTVLGKL 139
              +  ++    +++   + L T L+EE+ + L  +LG L
Sbjct: 106 EMAQVQIQKVHCLQEEAAEALLTNLSEEQRNELIELLGNL 145