BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3142.p (303 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 137 3e-32 AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 124 2e-28 PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 119 6e-27 BS_yvbU [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis 97 6e-20 RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 96 1e-19 >PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 311 Score = 137 bits (345), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 153/291 (52%), Gaps = 1/291 (0%) Query: 6 LQETALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAG 65 L + AL Y EV+ GS+ A+Q LN+ SAISRQ++SLEE L L +R P+G+ + Sbjct: 4 LSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEA 63 Query: 66 GEMLAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGF 125 GE+L AH R+ + V++ L AL+GLR G+VRLA EGF D + + + +F +YPG Sbjct: 64 GELLVAHYRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGI 123 Query: 126 VFQLFVGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPGPIALVMRNDHPLARFRH 185 ++ + V+E D+ L ++ + + E+ V P+ L++ +H LA R Sbjct: 124 ELEVRMAGANEGVALVKEDAVDLALVYAPVEDGELDVHVDTRQPLDLIIPANHALAGHRG 183 Query: 186 -LSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAISI 244 + + L+ +AL +T + QL IA +++ + P + +N + L N+V ++ Sbjct: 184 AVPMRALRNESLALIHNSTGMGQLAVIAAQLERIELRPKLRTNSVAVLTNFVKSGIGVAF 243 Query: 245 TGDVTVRYRIERGELSMRPIRDCPVDGRFVEVQTLAGRTLPRSVEIFLDYL 295 ++TV + IE G + P+ + + + GR L + L++L Sbjct: 244 MPELTVSHEIEAGHIRCLPLAHPALRDARARIVSHKGRELTVAAIACLEHL 294 >AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/266 (34%), Positives = 138/266 (51%), Gaps = 10/266 (3%) Query: 4 HHLQETALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLS 63 H +Q AL YF E+VR S+ A++ LNVA +A+SRQI +LE + L ER RG+ L+ Sbjct: 31 HPMQLRALMYFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLT 90 Query: 64 AGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYP 123 A GE+LAA A K E D V + LKGL+ GRV + ++ + L V+ F +YP Sbjct: 91 AAGELLAARAGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYP 150 Query: 124 GFVFQLFVGIPTMVARQVRE--GNADIGLTFSRLPEPE---IKVVHRQPGPIALVMRNDH 178 F++ + ARQ E G A+ L S L P+ +KV R ++ H Sbjct: 151 KLRFEVHI----TSARQAMEALGAAEADLVVS-LFAPKLSGVKVRSRTRISYDVIFPAGH 205 Query: 179 PLARFRHLSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLD 238 LA +SL +L P+ALPD + RQ FD + + ++PV ++ ++ L VL Sbjct: 206 ALAAQPEVSLKELAGMPLALPDKSFAARQAFDTLFADAGIELDPVFITSSLEMLKELVLG 265 Query: 239 NDAISITGDVTVRYRIERGELSMRPI 264 N A ++ ++V I G++ P+ Sbjct: 266 NAAATLLPALSVAREIRSGQMVAVPL 291 >PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 313 Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 8/289 (2%) Query: 5 HLQETALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSA 64 H+ A+ YF V RC SI EA++RLNVASSA++RQI LE+ + LF+R P G+ L+ Sbjct: 6 HIHAPAIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTG 65 Query: 65 GGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPG 124 GE+ A H + + +RV ++L AL+GLR+G V +A+ E D LP V+ +++YP Sbjct: 66 AGEIFARHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPD 125 Query: 125 FVFQLFVGIPTMVARQVREGNADIGLTFSRLPEP----EIKVVHRQPGPIALVMRNDHPL 180 + + + V G D+GL F+ LP ++ V H + G I + HPL Sbjct: 126 ITVGVTLLGSQAIPEAVSSGAVDLGLAFA-LPRSADLQQVSVGHFRLGAI---VSPQHPL 181 Query: 181 ARFRHLSLAQLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDND 240 AR + ++ A + + + ++ L R + V+ S+ ++ Sbjct: 182 ARHQAIAFADCVEHGLIMAKSELSIHHLLAPLQRRLREPRRAVLESSSLELSRQLARRGL 241 Query: 241 AISITGDVTVRYRIERGELSMRPIRDCPVDGRFVEVQTLAGRTLPRSVE 289 ++ + + I +GEL P++D + + GR LP +V+ Sbjct: 242 GVAFQTRLGIEADIAQGELRFLPLKDNGGIHSDLGLYVRTGRYLPVAVD 290 >BS_yvbU [K] COG0583 Transcriptional regulator Bsu Bacillus subtilis Length = 292 Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 101/193 (52%), Gaps = 3/193 (1%) Query: 9 TALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFER-RPRGMVLSAGGE 67 T L+ F+++ GS ++A Q LN+ A+S IS++E LD L R R G++L+ G+ Sbjct: 4 TQLKVFVKIAETGSFTKAGQALNMTQPAVSHAISAIEAELDVKLIIRDRRNGLMLTDTGK 63 Query: 68 MLAAHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVF 127 + H R++ ++V A KGL G + + + + F+P++I+ F+++YP Sbjct: 64 QILVHIREVLKGIEKVEQVAAAEKGLELGTIHIGTFSTASAYFMPKLISEFKQKYPKLEL 123 Query: 128 QLFVGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPGPIALVMRNDHPLARFRHLS 187 L G V + D+G+ P E++ +H + +A+V+R+DHPLA ++ Sbjct: 124 VLHEGTVNEVKEWLHTRMIDVGILL--YPTEEMEYIHLKKDKMAVVLRDDHPLASHSAIT 181 Query: 188 LAQLKPYPMALPD 200 L L PM + D Sbjct: 182 LKDLDHEPMIVCD 194 >RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 324 Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/291 (23%), Positives = 131/291 (45%), Gaps = 1/291 (0%) Query: 11 LRYFLEVVRCGSISEASQRLNVASSAISRQISSLEEILDTVLFERRPRGMVLSAGGEMLA 70 +R F ++ S+ +A+ +L ++ S +SR ++ +E+++ LF+R G++ + L Sbjct: 9 MRVFHAILEHRSVRKAADQLEMSRSLVSRYLTEMEDMIGGRLFDRTATGLMPTDAVPYLL 68 Query: 71 AHARKMALEADRVVADLQALKGLRSGRVRLASSEGFAIDFLPRVINTFQKQYPGFVFQLF 130 +AR M ++++ + L+ L+ G + ++ SEG + V+ F K+YPG L Sbjct: 69 EYARGMEASQEKLLDQMHQLRSLQKGNLLISLSEGLVDTLMEDVLAGFMKKYPGVEVVLN 128 Query: 131 VGIPTMVARQVREGNADIGLTFSRLPEPEIKVVHRQPGPIALVMRNDHPLARFRH-LSLA 189 + + V A IGL ++ I I + +HPLAR + LA Sbjct: 129 MRATAEIINDVATNEAHIGLAYNPPMTSGIAFCASAVHHIVAAVHPEHPLARCDDPVPLA 188 Query: 190 QLKPYPMALPDPTTTLRQLFDIACSRQQVVIEPVMTSNYIQSLHNYVLDNDAISITGDVT 249 Q YP+ + P L L + + + P +N + +L Y ++ D + Sbjct: 189 QALAYPVGIMPPAFGLGLLIRTIAKAENLNLTPNFNANTLMALRAYARHTRGVAFITDFS 248 Query: 250 VRYRIERGELSMRPIRDCPVDGRFVEVQTLAGRTLPRSVEIFLDYLVTELS 300 +R + G L P++ + ++ V GR LPR+ + ++ + LS Sbjct: 249 IRKEVAAGLLVGVPLKHPLAENQYARVMVKEGRPLPRAAQEVINSINAHLS 299