BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3138.p (334 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0350 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 326 4e-89 TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 319 5e-87 DR1568 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel trans... 317 3e-86 lin2297 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 314 2e-85 BS_oppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 308 1e-83 >BH0350 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Bha Bacillus halodurans Length = 329 Score = 326 bits (836), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 167/322 (51%), Positives = 217/322 (67%), Gaps = 6/322 (1%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQ 63 LL V+ LK TE+G + +V G+ F+V+ GE + +VGESGCGKS+TSL++MGL+ + Sbjct: 6 LLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSPGK 65 Query: 64 CSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGV 123 I F+G DL +SE++ +LRG +SMIFQEP+TSLNP +T+GNQL E +LQ V Sbjct: 66 IVGGDIRFNGQDLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEVILQHQQV 125 Query: 124 TRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTT 183 T+ EA+++ + +L + GI AE R YPHQLSGG+RQRVMIAM+L C P L+IADEPTT Sbjct: 126 TKEEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKLLIADEPTT 185 Query: 184 ALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLF 243 ALDVTIQAQIL+++R+L +E TA++ ITHDLGVV+ +AD V VMYAGQVVE DV LF Sbjct: 186 ALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVEQADVFTLF 245 Query: 244 AQPRHPYTRGLLNCIPVRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCALADGAC-ES 302 A P HPYT+GLL P G +LQ+I G VP+ GC F RC A C Sbjct: 246 ATPAHPYTQGLLASTP--NIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHATEQCVHQ 303 Query: 303 DPPMMQQGPRNAPHQARCCKLD 324 +PP+M+ G RC D Sbjct: 304 EPPLMKTG---RGQHVRCWLFD 322 >TM0501 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Tma Thermotoga maritima Length = 327 Score = 319 bits (818), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 160/322 (49%), Positives = 222/322 (68%), Gaps = 8/322 (2%) Query: 7 VKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRKAQCSA 66 ++NLK TE+G++ AV G+ F+VR GE L +VGESG GKS+TSL++M LL + + Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60 Query: 67 DHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPGVTRG 126 I+F G +L +SE + ++RGK ++MIFQEPM +LNP +T+G+Q+ EA++ V+ Sbjct: 61 GKIIFKGRNLLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQNVSEK 120 Query: 127 EARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPTTALD 186 EAR+ A+ LL + GI E R+ +YPHQLSGG+RQR MIAM+L C P L+IADEPTTALD Sbjct: 121 EARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADEPTTALD 180 Query: 187 VTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQLFAQP 246 VTIQAQIL +++ELQ+E+G A+I ITHD+GVV+ ++D+VAVMYAG+VVE DV +F +P Sbjct: 181 VTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVKTIFTEP 240 Query: 247 RHPYTRGLLNCIPVRGKTLPGSRLQAIPGVVPSLVGQVSGCAFRNRCALAD-GACESDPP 305 +HPYT LL IP + RL++IPG VP + GC F RC + G C+ + P Sbjct: 241 KHPYTYALLESIP--RIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCDVEEP 298 Query: 306 MMQQGPRNAPHQARCC---KLD 324 ++ N H+ RC KLD Sbjct: 299 ELEDLDGN--HKVRCFFWQKLD 318 >DR1568 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Dra Deinococcus radiodurans Length = 386 Score = 317 bits (812), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 169/336 (50%), Positives = 220/336 (65%), Gaps = 19/336 (5%) Query: 3 VLLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRK- 61 VLL V NLK T++G++ +V G+ F +++GE L +VGESG GKS+TSL +M L+P Sbjct: 32 VLLAVNNLKTYFNTDDGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIPMPP 91 Query: 62 AQCSADHILFDGAD-----LNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEA 116 Q + ILF G D L +SE + ++RG +SMIFQEPMTSLNP YT+G+Q+ EA Sbjct: 92 GQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGDQIAEA 151 Query: 117 MLQQPGVTRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLI 176 ++ G TR EA + A +L GI E R+ +YPHQ+SGG+RQRVMIAM+L C P L+ Sbjct: 152 VVLHQGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSCKPALL 211 Query: 177 IADEPTTALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVET 236 IADEPTTALDVTIQAQIL ++R LQ+E G +++FITH+LGVV+ +ADRV VMY G+VVE Sbjct: 212 IADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYGGRVVEE 271 Query: 237 TDVAQLFAQPRHPYTRGLLNCIP---------VRGKTLPGSRLQAIPGVVPSLVGQVSGC 287 DV ++F PRHPYT GLLN IP V G+ P RL+AIPG VP+ + GC Sbjct: 272 GDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQ--PKKRLEAIPGNVPNPLNLPPGC 329 Query: 288 AFRNRCALADGACESDPPMMQQGPRNAPHQARCCKL 323 F RC A C P ++ H ARC + Sbjct: 330 TFEPRCKFAVPQCSQAVPALED--TGGGHMARCIRW 363 >lin2297 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Lin Listeria innocua Length = 358 Score = 314 bits (804), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 219/311 (70%), Gaps = 6/311 (1%) Query: 1 MSVLLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPR 60 M LL+VK+L + T G + A+RG++F + +GE L +VGESG GKS+T+ ++M LLP Sbjct: 1 MEKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPE 60 Query: 61 -KAQCSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQ 119 ++ + ILF+G D+ EKQ ++RGK ++MIFQ+PMTSLNP+ T+G Q+ E +++ Sbjct: 61 GNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIK 120 Query: 120 QPGVTRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIAD 179 +++ EA + AL LL GIANAE+R++QYPHQ SGG+RQRV+IA+SL C+P ++IAD Sbjct: 121 HQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIAD 180 Query: 180 EPTTALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDV 239 EPTTALDVTIQAQIL ++++LQ++ T++IFITHDLGVV+ +ADRVAVMY G++VE V Sbjct: 181 EPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTV 240 Query: 240 AQLFAQPRHPYTRGLLNCIPVRGKTLPGSRLQAIPGVVPSLVGQVSGCAF--RNRCALAD 297 ++F P+HPYT GL++ +P L IPG P L+ G AF RN+ A+ Sbjct: 241 DEIFYNPQHPYTWGLISSMPTLDTD--DEELFVIPGTPPDLLHPPKGDAFAARNKYAMQI 298 Query: 298 GACESDPPMMQ 308 E +PP+ + Sbjct: 299 D-LEEEPPLFK 308 >BS_oppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Bsu Bacillus subtilis Length = 358 Score = 308 bits (789), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 155/310 (50%), Positives = 210/310 (67%), Gaps = 9/310 (2%) Query: 4 LLDVKNLKVDLPTENGMLHAVRGIDFQVRRGEMLCLVGESGCGKSMTSLALMGLLPRK-A 62 LL+VK+L + T G + A+RG++F + +GE L +VGESG GKS+TS A+M L+P Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66 Query: 63 QCSADHILFDGADLNGMSEKQRMQLRGKRMSMIFQEPMTSLNPSYTLGNQLCEAMLQQPG 122 ILF+G DL +SEK+ +RGK + MIFQ+PMTSLNP+ +G Q+ E + + Sbjct: 67 YFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHEK 126 Query: 123 VTRGEARERALYLLHRTGIANAEDRLRQYPHQLSGGLRQRVMIAMSLMCSPDLIIADEPT 182 +++ A++RA+ LL GI E R+ Q+PH+ SGG+RQRV+IAM+L +P L+IADEPT Sbjct: 127 ISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEPT 186 Query: 183 TALDVTIQAQILRMIRELQQEFGTAVIFITHDLGVVSRIADRVAVMYAGQVVETTDVAQL 242 TALDVTIQAQIL ++++LQ++ T++IFITHDLGVV+ +ADRVAVMYAGQ+VET V ++ Sbjct: 187 TALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDEI 246 Query: 243 FAQPRHPYTRGLLNCIPVRGKTLPGS---RLQAIPGVVPSLVGQVSGCAFRNRCALA-DG 298 F PRHPYT GLL +P TL S L AIPG P L G AF R + A Sbjct: 247 FYDPRHPYTWGLLASMP----TLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKI 302 Query: 299 ACESDPPMMQ 308 E +PPM + Sbjct: 303 DFEQEPPMFK 312