BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3133.p         (252 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4066 [S] COG3495 Uncharacterized protein conserved in bacteria...   103   4e-22
VC2555 [S] COG3495 Uncharacterized protein conserved in bacteria...    92   2e-18
PA5423 [S] COG3495 Uncharacterized protein conserved in bacteria...    83   8e-16
mlr0556 Non COG                                                        60   5e-09
RSc0127 [S] COG3391 Uncharacterized conserved protein Rso Ralsto...    30   6.8  

>PA4066 [S] COG3495 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 172

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 67/100 (67%), Gaps = 1/100 (1%)

Query: 148 APVDPSMEGKPVRLPGFVVSLD-REGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKA 206
           APV  +++G   +LPG++V L+  E   + EFLLVPY+GACIHVPPPP+NQI++V++AK 
Sbjct: 68  APVVKALDGIEAKLPGYIVPLEISEAGLVTEFLLVPYYGACIHVPPPPSNQIVYVKTAKG 127

Query: 207 VKNVRTMDAVWISGVLKVERSDSSMGASSYSMKAVSVQPY 246
           V+        W+ G  KVE + S + A+ Y M+A  V PY
Sbjct: 128 VQMDELYQPFWVEGTFKVENASSELAAAGYRMQASKVTPY 167


>VC2555 [S] COG3495 Uncharacterized protein conserved in bacteria Vch
           Vibrio cholerae
          Length = 173

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 9/145 (6%)

Query: 102 EIAWESLIPKDWDPMAPFKGLKLDQLSDDDPRADAALWKAKKYWKEAPVDPSMEGKPVRL 161
           ++ W  LIP++   +   +G+ +   + ++P     +   +K          + G  V++
Sbjct: 35  QLDWLDLIPENERNLFDQQGMPMPDHNGNEPAKQQQIGTVRK---------ELNGSRVKI 85

Query: 162 PGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWISGV 221
           PGFV+ L+ + + + EFLLVPYFGACIHVPPPP NQII+V+  K        D +++ G 
Sbjct: 86  PGFVIPLEGDDKKVTEFLLVPYFGACIHVPPPPPNQIIYVKFPKGAPIQELWDVIYVIGE 145

Query: 222 LKVERSDSSMGASSYSMKAVSVQPY 246
           LK E     +  ++Y++    +  Y
Sbjct: 146 LKTESLSHDLAETAYTIIGTEIAEY 170


>PA5423 [S] COG3495 Uncharacterized protein conserved in bacteria Pae
           Pseudomonas aeruginosa
          Length = 182

 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 1/93 (1%)

Query: 153 SMEGKPVRLPGFVVSLDREGEA-LKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVR 211
           S++GK +RL G+ V L+ + +  + EF LVPY GACIHVPPPP NQI+ VR  + +K   
Sbjct: 83  SLDGKAIRLGGYPVPLENDAKGRVTEFFLVPYPGACIHVPPPPPNQIVLVRYPQGLKLTD 142

Query: 212 TMDAVWISGVLKVERSDSSMGASSYSMKAVSVQ 244
               +W+SG LK+E+  + +  ++Y++    V+
Sbjct: 143 IYTPLWVSGTLKIEQVSNDLADAAYAIDKARVK 175


>mlr0556 Non COG
          Length = 155

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 8/92 (8%)

Query: 160 RLPGFVVSLDREGEALKEFLLVPYFGACIHVPPPPANQIIHVRSAKAVKNVRTMDAVWIS 219
           +L G+ + +DR+G+ + +FLLVP+ GAC H+P PP NQI+ V  A   K  +   +V ++
Sbjct: 38  QLAGYALPVDRDGDLVYQFLLVPWTGACSHMPTPPPNQIVLVTPAHPYKMSQAYQSVAVT 97

Query: 220 GVLK--VERSD------SSMGASSYSMKAVSV 243
           G LK  +E+S        S+  S YS++   V
Sbjct: 98  GALKPDIEKSQLFILDGVSVIQSGYSVRKADV 129


>RSc0127 [S] COG3391 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 480

 Score = 29.6 bits (65), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 5  YWIGGIVVAGLWAGLGVRLLSQGYAHVTSTA 35
          Y +GG  VAGL +GL V+LL+ G   VT TA
Sbjct: 67 YSVGG-TVAGLGSGLSVKLLNNGGDAVTVTA 96