BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3126.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc01833 [S] COG1359 Uncharacterized conserved protein Sme Sinor...    64   1e-10
sll1783 [S] COG1359 Uncharacterized conserved protein Syn Synech...    60   2e-09
BS_ycnE [S] COG1359 Uncharacterized conserved protein Bsu Bacill...    57   1e-08
PA2198 [S] COG1359 Uncharacterized conserved protein Pae Pseudom...    56   2e-08
STM3180 [S] COG1359 Uncharacterized conserved protein Sty Salmon...    54   1e-07

>SMc01833 [S] COG1359 Uncharacterized conserved protein Sme Sinorhizobium
           meliloti
          Length = 98

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 9/99 (9%)

Query: 3   IVTVVAIITAKPGKREELLSIARANLAAVRAEAGCIEYGLVTDVEGFGPNQAPLGPDTFA 62
           +V ++A +TA  GK +E++++    + A   EAGC+ Y L          + P  PD   
Sbjct: 1   MVYIIAYLTAHAGKGDEVVALTTPLIEATLKEAGCVSYEL---------YRKPTDPDALV 51

Query: 63  FVEKWKDEEALRLHFTLPHMTDYREKSKDLIAERKVHVL 101
           FVE WKD  A+  HF  PH+  ++  + +L+A  +V ++
Sbjct: 52  FVETWKDRAAIDAHFAEPHLKAFQTAAANLLASARVEIV 90


>sll1783 [S] COG1359 Uncharacterized conserved protein Syn Synechocystis
          Length = 147

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 4   VTVVAIITAKPGKREELLSIARANLAAVRAEAGCIEYGLVTDVEGFGPNQAPLGPDTFAF 63
           + V   I  KP K+EE +++++  +   R+E GCI Y    D             ++F F
Sbjct: 50  IVVAGNIKVKPDKKEEFIALSQTFIEPSRSEPGCISYSFYED---------ETEDNSFLF 100

Query: 64  VEKWKDEEALRLHFTLPHMTDYREKSKDLIAE 95
            E W++  AL  HF  P+  ++ EKS DL+A+
Sbjct: 101 FEVWRNRAALDYHFQTPYFHEFVEKSPDLLAK 132


>BS_ycnE [S] COG1359 Uncharacterized conserved protein Bsu Bacillus
          subtilis
          Length = 95

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 3  IVTVVAIITAKPGKREELLSIARANLAAVRAEAGCIEYGLVTDVEGFGPNQAPLGPDTFA 62
          ++ + A I  KP KREE LS A++ +   RAE G  +Y L   V   G        +TF 
Sbjct: 1  MIVLQAYIKVKPEKREEFLSEAQSLVQHSRAEEGNAQYDLFEKV---GEE------NTFV 51

Query: 63 FVEKWKDEEALRLHFTLPHMTDYREKSKDLIA 94
           +EKWKDE A++ H    H   +  K K+L++
Sbjct: 52 MLEKWKDEAAMKFHNETAHFQGFVAKGKELLS 83


>PA2198 [S] COG1359 Uncharacterized conserved protein Pae Pseudomonas
           aeruginosa
          Length = 114

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 9/99 (9%)

Query: 4   VTVVAIITAKPGKREELLSIARANLAAVRAEAGCIEYGLVTDVEGFGPNQAPLGPDTFAF 63
           V VVA++ A+ G+  E+  +  A +   RAE GC+ Y L   ++  G          F F
Sbjct: 5   VRVVALLQAREGRAAEVERLLLACVQPSRAEDGCLSYVLHRSLDEAG---------RFVF 55

Query: 64  VEKWKDEEALRLHFTLPHMTDYREKSKDLIAERKVHVLK 102
           VE+W D +A+  H  +PH     +   DL+A+R+V +L+
Sbjct: 56  VERWADRDAIERHRRMPHYRAMADAVADLLADRQVFLLE 94


>STM3180 [S] COG1359 Uncharacterized conserved protein Sty Salmonella
           typhimurium LT2
          Length = 104

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)

Query: 3   IVTVVAIITAKPGK--REELLSIARANLAAVRAEAGCIEYGLVTDVEGFGPNQAPLGPDT 60
           ++TV+A I  +PG+  R+ +L      +  V  E GC  Y  + D    G +   L PD+
Sbjct: 1   MLTVIAEIRTRPGQHHRQAVLDQFAKIIPTVLKEEGCHGYAPMVD-HAAGVSFQTLAPDS 59

Query: 61  FAFVEKWKDEEALRLHFTLPHMTDYREKSKDLIAERKVHVLKSA 104
              +E+W+    L  H   PHM  Y +  KD + E  + +L+S 
Sbjct: 60  IVMIEQWESVAHLEAHLQTPHMKAYSDAVKDDVLEMNIRILESG 103