BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3125.p (312 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3765 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 158 1e-38 CC1117 Non COG 156 5e-38 VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae 152 1e-36 mlr1973 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 150 3e-36 YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis 142 8e-34 >AGc3765 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 300 Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 4/295 (1%) Query: 1 MPSPLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 M + LP LK L+ FEAA R RS+TLA++EL +T AVS QI+ LE LF R+ R + Sbjct: 1 MATELPSLKGLQAFEAAARYRSVTLASNELNVTPGAVSLQIRELEARLGVQLFFRKPRSI 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 + T +Y ++ + + A L + V+ L P+ A++WL+PRL FQ + Sbjct: 61 QLTREGERYYGALRTAFRMMREATAELTARSEITVLTLSCTPTFAVQWLMPRLPSFQQQH 120 Query: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETH-P 179 P ++VR++ T + + +D D+ + G + +RF+DD ++P+ +P LE + P Sbjct: 121 PHVDVRISVT-NRLVDFSRDDVDLAVRHGFGRYEGLESIRFIDDSTLPVCAPQLLEKYGP 179 Query: 180 IRVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGM 239 +R D VPL+H +R+ W +WL AG + GTV+ S +L AA G+ + Sbjct: 180 LREAGDLKSVPLLHDENRN-EWRRWLEAAGASEVDASGGTVFIDSNGALDAAKAGHGIAL 238 Query: 240 GTLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITW-LKQMG 293 +LV +L G L+ F + Y ++Y NP L T I W L Q G Sbjct: 239 TRRSLVSRELVEGALIAPFGTDMASTLAYFLVYPRRMLDNPDLVTLIDWMLSQAG 293 >CC1117 Non COG Length = 340 Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 149/291 (51%), Gaps = 6/291 (2%) Query: 5 LPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGVEPTE 64 LPPL AL+ FEAA R + + AA EL +T AVSQQI++LE+Y LF R +G+ T+ Sbjct: 32 LPPLNALRAFEAAARHLNFSRAADELSVTPGAVSQQIQNLEDYVGAALFKRTPKGLLLTD 91 Query: 65 AALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDNPRIE 124 AA ++ + DR+A AA L A R + L AAPS A +WL+PRL +F+ +P+++ Sbjct: 92 AAQTALPALREAFDRLAEAASLLTAAVDGRRLTLTAAPSFAAKWLVPRLGKFEQAHPQVD 151 Query: 125 VRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLETHPIRVPR 184 V ++ M E + D+ I G + +R L + VP+ASP LE + + P Sbjct: 152 VWLSAGM-EVVDFATGEVDMAIRYGSGRYPGLEVIRLLHETVVPVASPELLEQNALERPE 210 Query: 185 DFVEVPLIHLSSRSA-----AWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGM 239 D L+H S A W+ WL G+ G + S L ++AAA +G+ + Sbjct: 211 DLQHHILLHDGSPDADDSCPDWAMWLAARGIRGVDGARGPRFNQSSLVIEAAANGRGIAL 270 Query: 240 GTLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITWLK 290 L DL +GRLV F Y++++ P +K F+ WLK Sbjct: 271 AKRTLAQADLDSGRLVIPFEASTAVDFAYYVVHPKAKGRLPQVKAFVNWLK 321 >VC0896 [K] COG0583 Transcriptional regulator Vch Vibrio cholerae Length = 306 Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 150/301 (49%), Gaps = 5/301 (1%) Query: 1 MPSPLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 M LPPL +LKVFEAA R S T AA ELF+T +AVS QIK+LEE+ LF R++R + Sbjct: 1 MSRRLPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRSL 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 TE +++ ++K +A A + L + + + PS A++WL+PRL+ F Sbjct: 61 LLTEEGQSYFLDIKDIFSSLAEATDKLLERSEKGALTISLPPSFAIQWLVPRLADFNQQE 120 Query: 121 PRIEVRVTTT-MSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPH-FLETH 178 P I+VR+ M E + D DV I+ G + + +PL SP L Sbjct: 121 PDIDVRIKAVDMDE--GSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPLCSPALLLGNK 178 Query: 179 PIRVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVG 238 P+ D L+H +SR W Q+ + G+ G ++ HS + LQAAA QGV Sbjct: 179 PMEKLSDLAYHTLLHDTSRK-DWKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQGVA 237 Query: 239 MGTLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITWLKQMGLASSF 298 +G L ++ AGRL+ F E+++ ++++ + TF W+ + + Sbjct: 238 LGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWMLKKARSEQV 297 Query: 299 D 299 D Sbjct: 298 D 298 >mlr1973 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 303 Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 156/295 (52%), Gaps = 13/295 (4%) Query: 1 MPSPLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 MP LPPL AL F+AA R S + AA EL +TH AVS+ I+++E+ LF R +R V Sbjct: 1 MPRRLPPLTALPAFDAAARHLSFSRAADELNLTHGAVSRAIRNIEDRLGIQLFDRGTRSV 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 T A+ EV +LD+IA A +R++ + + A RWL+PRL +F N Sbjct: 61 RLTAVGAAYAVEVGKALDQIAAATIAATPDRSTRILNVSTSDGFAGRWLVPRLHRFHRAN 120 Query: 121 PRIEVRVTTT--MSEYFEDVKDPFDVIIWRSPLERSGYDCV--RFLDDVSV-PLASPHFL 175 I+VR+ T+ ++++ V D D+ I + GY V FL D V P+ SP L Sbjct: 121 ADIDVRLATSGVLADF---VSDGIDIAI---RYGKGGYTGVTAEFLADEEVFPVCSPELL 174 Query: 176 ET-HPIRVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATD 234 + HP+R+P D LIH + R W+ WL +AGV G ++ + +++AA Sbjct: 175 QGEHPLRLPGDLRHHKLIHDAFR-IDWATWLQQAGVDGIDPKRGVRFDSATFAVEAAVHG 233 Query: 235 QGVGMGTLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITWL 289 +GV +G ALV DLAAGRLVR F + Y+++Y A ++ F WL Sbjct: 234 EGVLLGRSALVSADLAAGRLVRPFDLALKSAASYYLVYPDGALRQKKIRAFRDWL 288 >YPO1029 [K] COG0583 Transcriptional regulator Ype Yersinia pestis Length = 305 Score = 142 bits (359), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 90/290 (31%), Positives = 144/290 (49%), Gaps = 3/290 (1%) Query: 1 MPSPLPPLKALKVFEAAVRTRSLTLAAHELFITHSAVSQQIKSLEEYFEQPLFLRQSRGV 60 M LPPL AL+ F+AA R S T AA ELF+T +AVS QIKSLE++ LF R++R + Sbjct: 1 MSKRLPPLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSL 60 Query: 61 EPTEAALAFYAEVKASLDRIALAAEHLALAGKSRVVRLIAAPSVAMRWLIPRLSQFQIDN 120 TE ++Y ++K I A L + + PS A++WL+PRLS F Sbjct: 61 LLTEEGQSYYLDIKEIFTSINEATRKLQARSAKGALTVSLPPSFAIQWLVPRLSGFNAAY 120 Query: 121 PRIEVRVTTTMSEYFEDVKDPFDVIIWRSPLERSGYDCVRFLDDVSVPLASPHFLE-THP 179 P I+VR+ E + + D DV I+ SG R + +P+ +P L + Sbjct: 121 PGIDVRIQAVDREE-DKLADDVDVAIFYGRGNWSGLRTERLYAEFLLPVCAPSLLTGENG 179 Query: 180 IRVPRDFVEVPLIHLSSRSAAWSQWLGKAGVAVRRKMPGTVYEHSFLSLQAAATDQGVGM 239 ++VP D L+H +SR W + + GV G ++ HS + +QAA QG+ + Sbjct: 180 LKVPSDLANHTLLHDTSRR-DWLAYTRQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIAL 238 Query: 240 GTLALVDDDLAAGRLVRLFPEIVLHGEGYHMLYRSNADSNPALKTFITWL 289 + ++ AGRLV F ++++ ++++ + + F W+ Sbjct: 239 VNNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWI 288