BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3113.p (306 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0826 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 343 2e-94 SMa1440 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 312 6e-85 AGl3338 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 307 2e-83 Cgl0448 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 258 2e-68 BS_ycbC [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuram... 197 2e-50 >RSp0826 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Rso Ralstonia solanacearum Length = 311 Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 166/303 (54%), Positives = 211/303 (69%) Query: 1 MSQYTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEF 60 MS+YTP + + +GLLSFP+T F F Y L WL + A+ LFAAGGTGEF Sbjct: 1 MSRYTPSEFAHQIGTGLLSFPVTHFKSDLSFDEAAYRANLSWLFSHEAAGLFAAGGTGEF 60 Query: 61 FSLVPGEYSDIIRTAVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTE 120 FSL P E ++R AV G++P+IA AG T A Y Q AE GA GILL+P YLTE Sbjct: 61 FSLTPAETDRVVRAAVAETGGRLPVIAPAGYGTAMAKEYCQAAEAAGADGILLLPPYLTE 120 Query: 121 ASQDGIAAHVEAVCKSVNFGVIIYNRAVCKLNADTLQKLAERCPNLIGFKDGIGEIEPMV 180 AS DG+AAHVE VCKS GVI+YNRA L+ + L++LAERCPNL+GFKDG+G++E M Sbjct: 121 ASADGVAAHVEQVCKSTRLGVIVYNRANQVLDENHLERLAERCPNLVGFKDGVGDLELMT 180 Query: 181 HIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVQFYQAIAKDDHDT 240 I +LG+RFTY+GGLPTAE +A Y +GV YSSA+FNF+PK A+ FY A+ DH Sbjct: 181 RIYSRLGERFTYIGGLPTAETFAMPYLTMGVTTYSSAIFNFVPKFALDFYAAVRAADHAK 240 Query: 241 VGKLIDEFFLPYLAIRNRKAGYAVSIVKAGARIVGHDAGPVRTPLTDCTPEEHEELAALI 300 ++++F LPY+A+RNRK GYAVSIVKAG +++G AGPVR PLTD T E EL+AL+ Sbjct: 241 AYAMLNDFVLPYIALRNRKRGYAVSIVKAGMKVIGRSAGPVRAPLTDLTEAELAELSALV 300 Query: 301 QKL 303 ++ Sbjct: 301 ARI 303 >SMa1440 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Sme Sinorhizobium meliloti Length = 301 Score = 312 bits (800), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 155/297 (52%), Positives = 202/297 (68%), Gaps = 1/297 (0%) Query: 5 TPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSLV 64 +P+++K + SGLLSFP+T F ++Y +EWL+ + A+ALFAAGGTGEFFSL Sbjct: 2 SPEEIKSRVGSGLLSFPVTHFTSDYKLNLESYRRHVEWLSGFEAAALFAAGGTGEFFSLS 61 Query: 65 PGEYSDIIRTAVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTEASQD 124 P E + R A D G+VPIIAG G T A+ A+ E GA GILL+PHYLTEA Q+ Sbjct: 62 PNEVGQVTRAAKDVS-GEVPIIAGCGYGTSLAVETAKIVEEAGADGILLLPHYLTEAPQE 120 Query: 125 GIAAHVEAVCKSVNFGVIIYNRAVCKLNADTLQKLAERCPNLIGFKDGIGEIEPMVHIRR 184 GI AHV+AVC S GVI+YNRA NADT+ +LAE CPNLIGFKDG G+++ + H+ Sbjct: 121 GIYAHVKAVCDSTGLGVILYNRANSVANADTVARLAEACPNLIGFKDGTGKVDLVRHVTA 180 Query: 185 KLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVQFYQAIAKDDHDTVGKL 244 KLGDR Y+GG+PT E++A + +GV YSSAVFNF+P+ A +FY+A+ D + + Sbjct: 181 KLGDRLCYIGGMPTHELFAEGFNGVGVTTYSSAVFNFVPELAQRFYRAMRAGDRAVMEGI 240 Query: 245 IDEFFLPYLAIRNRKAGYAVSIVKAGARIVGHDAGPVRTPLTDCTPEEHEELAALIQ 301 + FF P+ A+R+RKAGY VSI+KAG + G GPVR PL D T EE E L LI+ Sbjct: 241 LHTFFFPFAALRDRKAGYPVSIIKAGVELAGFAPGPVRPPLVDLTGEEREILQGLIE 297 >AGl3338 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 307 bits (787), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 154/296 (52%), Positives = 199/296 (67%), Gaps = 1/296 (0%) Query: 5 TPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSLV 64 P+ +K L SGLLSFP+T FD +G F +Y E +EWLA Y A LFAAGGTGEFFSL Sbjct: 3 NPEQIKTALGSGLLSFPVTHFDAEGRFAADSYREHVEWLAGYKAPVLFAAGGTGEFFSLK 62 Query: 65 PGEYSDIIRTAVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTEASQD 124 P E I+ A + G+ I++G G T A+ A+ E++GA GILL+PHYL +A Q+ Sbjct: 63 PDEIPTIVAAAKEVA-GETAIVSGCGYGTEIAVDIARSVEKVGADGILLLPHYLIDAPQE 121 Query: 125 GIAAHVEAVCKSVNFGVIIYNRAVCKLNADTLQKLAERCPNLIGFKDGIGEIEPMVHIRR 184 G+ AH++ VC+SV GV++YNR L ADTL +L + CPNL+GFKDG G+I + I Sbjct: 122 GLYAHIKKVCQSVGIGVMVYNRDNSVLQADTLARLCDECPNLVGFKDGTGDIGLVRQITA 181 Query: 185 KLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVQFYQAIAKDDHDTVGKL 244 K+GDR YLGG+PTAE++A AY G YSSAVFNF+P A +FY A+ + T ++ Sbjct: 182 KMGDRLMYLGGMPTAELFAEAYLGAGFTTYSSAVFNFVPGLANEFYAALRAGERATCERI 241 Query: 245 IDEFFLPYLAIRNRKAGYAVSIVKAGARIVGHDAGPVRTPLTDCTPEEHEELAALI 300 + +FF P++AIRNR GYAVS VKAG R+ G +AGPVR PL D T EE L ALI Sbjct: 242 LVDFFYPFMAIRNRAKGYAVSAVKAGVRLQGFNAGPVRAPLKDLTNEEIGMLEALI 297 >Cgl0448 [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Cgl Corynebacterium glutamicum Length = 316 Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 140/304 (46%), Positives = 189/304 (62%) Query: 1 MSQYTPQDLKQILSSGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEF 60 M++++PQDL L GLLSFP T F + + Y+E +EW + Y + LFAAGGTGE Sbjct: 1 MARFSPQDLADHLKDGLLSFPATAFQDDLEVDEAAYVEHIEWQSSYPVAGLFAAGGTGEG 60 Query: 61 FSLVPGEYSDIIRTAVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTE 120 FSL E + + AV +VP++ A GST++AIA AQ AE GA G+LL+P YLTE Sbjct: 61 FSLTVEENHRVTQLAVQASSPEVPVLGSATGSTKSAIANAQGAEAAGAEGVLLLPPYLTE 120 Query: 121 ASQDGIAAHVEAVCKSVNFGVIIYNRAVCKLNADTLQKLAERCPNLIGFKDGIGEIEPMV 180 +G+ H AVC+S + GVI+YNRA + + + +L+ER PN IGFKDG G IE + Sbjct: 121 CDAEGLYNHAAAVCESTSLGVIVYNRANAIYSPEVIARLSERYPNFIGFKDGTGNIEHLA 180 Query: 181 HIRRKLGDRFTYLGGLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVQFYQAIAKDDHDT 240 I GDR YLGGLPTAE +A +G+ YSSA+FNFIP A+ FY + D Sbjct: 181 KITTLCGDRLFYLGGLPTAETFALPLLQMGMSTYSSAMFNFIPDFALSFYADVRAQDSAA 240 Query: 241 VGKLIDEFFLPYLAIRNRKAGYAVSIVKAGARIVGHDAGPVRTPLTDCTPEEHEELAALI 300 V + + +F LPYL IR+R GY VSIVK G + VG +AG VR PL + + ++ +L+ L+ Sbjct: 241 VKQKLSDFVLPYLDIRDRAQGYGVSIVKGGLKAVGRNAGGVRPPLRNLSEQDIADLSDLL 300 Query: 301 QKLG 304 G Sbjct: 301 ATSG 304 >BS_ycbC [EM] COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase Bsu Bacillus subtilis Length = 308 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 165/289 (57%), Gaps = 2/289 (0%) Query: 15 SGLLSFPLTDFDEQGDFRPKTYIERLEWLAPYGASALFAAGGTGEFFSLVPGEYSDIIRT 74 +G+L FP+ F+ QG + + +E+L G A+F A G+GEF SL EY ++ Sbjct: 9 AGILGFPVAPFNTQGTLEEEALFQNIEFLLNEGLEAIFIACGSGEFQSLSQKEYEQMVEV 68 Query: 75 AVDTCRGKVPIIAGAGGSTRAAIAYAQEAERLGAHGILLMPHYLTEASQDGIAAHVEAVC 134 AV GKVP+ G GG+ A+ +AQ +E+ GA G L++P YL Q+G+ + + + Sbjct: 69 AVSAAGGKVPVYTGVGGNLSTALDWAQLSEKKGADGYLILPPYLVHGEQEGLYQYAKTII 128 Query: 135 KSVNFGVIIYNRAVCKLNADTLQKLAERCPNLIGFKDGIGEIEPMVHIRRKLGDRFTYLG 194 +S + I+Y R L+ + +++L E C L+G KDG+G ++ +++ +GDR +L Sbjct: 129 ESTDLNAILYQRDNAVLSVEQIKRLTE-CEQLVGVKDGVGNMDLNINLVYTIGDRLGWLN 187 Query: 195 GLPTAEVYAAAYKALGVPVYSSAVFNFIPKTAVQFYQAIAKDDHDTVGKLIDEFFLPYLA 254 G+P AEV AY +G YSSA+ N+IP + FY A+ + + V +L LP Sbjct: 188 GMPMAEVTMPAYLPIGFHSYSSAISNYIPHISRMFYDALKNGNDELVKELYRHVILPIND 247 Query: 255 IRNRKAGYAVSIVKAGARIVGHDA-GPVRTPLTDCTPEEHEELAALIQK 302 IR ++ GYAVS++KAG I+G + R P+ + +++L A++++ Sbjct: 248 IRKQRKGYAVSLIKAGMEIMGLNVRNTARPPVGPVEKDHYQQLEAILKQ 296