BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3100.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3714 [TK] COG2197 Response regulator containing a CheY-like re... 113 3e-25 RSp1621 [TK] COG2197 Response regulator containing a CheY-like r... 110 3e-24 ZrcsB [TK] COG2197 Response regulator containing a CheY-like rec... 107 3e-23 STM2270 [TK] COG2197 Response regulator containing a CheY-like r... 106 4e-23 rcsB [TK] COG2197 Response regulator containing a CheY-like rece... 106 4e-23 >PA3714 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 213 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 112/227 (49%), Gaps = 25/227 (11%) Query: 8 KMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSL-GS 66 K R+ L+DDHA+ G+ L+ D ++ + L+ L A P DLL+ D + GS Sbjct: 2 KTRVILVDDHALTLIGMRYLLSAYDDLRIVAQAQDADGLLAQLEAHPCDLLITDLMMPGS 61 Query: 67 NDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIRA 126 DGL L++ +R R+P I+V + +PA V +K G G V K L +L AIR Sbjct: 62 QQADGLRLVQKVRRRYPDLPIIVVTMLGNPALVSSLLKLGIHGLVSKRGMLDDLPKAIR- 120 Query: 127 IHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPRE 186 H GR +SR +A L +P L+ + L+PRE Sbjct: 121 -HAGRRPF---ISRSIAHLLEVGEAEHGKP-------------------LASLEQLTPRE 157 Query: 187 REVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNELF 233 EVLR GL+V +IA + RS +TIS QK SA RKLG+ S+ LF Sbjct: 158 VEVLRLYGSGLAVGEIAIRLCRSKQTISAQKSSAMRKLGLDSNAGLF 204 >RSp1621 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 219 Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 26/228 (11%) Query: 7 SKMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSLGS 66 S++++ + DDH +V G L + PD V+ T ++L+ L P D+LL DY S Sbjct: 2 SRIKVGIADDHPIVLLGATSMLKDHPDIEVLFTCETIEQLLKQLAEHPVDVLLCDYEFES 61 Query: 67 N-DIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQ-ELSELILAI 124 + DGL+L++ LR P ++IL+ SAHS+P+ V + GA GF+GKS+ + L A+ Sbjct: 62 DPQADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLAAAV 121 Query: 125 RAIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSP 184 R + G Y+ ++S AAL +A G + + LS Sbjct: 122 RKVAGGSLYVPGSLS---AALLSARYGKHG---------------------MVGVEALST 157 Query: 185 REREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNEL 232 RE V + DGL++ +IA++ RS KTIS QK +A +KLGV++D EL Sbjct: 158 REVIVAQMTADGLTIGEIADRLKRSPKTISNQKVAAMKKLGVKNDVEL 205 >ZrcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 216 Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 28/229 (12%) Query: 7 SKMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSL-G 65 + M + + DDH +V +G+ K L + +V+G F S L+ L A +L+ D S+ G Sbjct: 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPG 61 Query: 66 SNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIR 125 DG+ LI+ ++ FP I+V + +++PA + + G V K ++L A+ Sbjct: 62 DKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 126 AIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPR 185 A+ G+++ ++SR L + A G + LSP+ Sbjct: 122 ALQKGKKFTPESVSRLLEKISAGGYGDK---------------------------RLSPK 154 Query: 186 EREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSDNELFK 234 E EVLR +G VT+IA+K RS+KTIS QK+SA KLGV +D L Sbjct: 155 ESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDXALLN 203 >STM2270 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 216 Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 28/224 (12%) Query: 7 SKMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSL-G 65 + M + + DDH +V +G+ K L + +V+G F S L+ L A +L+ D S+ G Sbjct: 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPG 61 Query: 66 SNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIR 125 DG+ LI+ ++ FP I+V + +++PA + + G V K ++L A+ Sbjct: 62 DKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 126 AIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPR 185 A+ G+++ ++SR L + A G + LSP+ Sbjct: 122 ALQKGKKFTPESVSRLLEKISAGGYGDK---------------------------RLSPK 154 Query: 186 EREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSD 229 E EVLR +G VT+IA+K RS+KTIS QK+SA KLGV +D Sbjct: 155 ESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVEND 198 >rcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 216 Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 28/224 (12%) Query: 7 SKMRIALLDDHAVVRYGLAKRLAEEPDFSVIGAFATSKELMTALRAEPADLLLIDYSL-G 65 + M + + DDH +V +G+ K L + +V+G F S L+ L A +L+ D S+ G Sbjct: 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPG 61 Query: 66 SNDIDGLNLIRALRVRFPRSKILVTSAHSSPATVVMAMKAGARGFVGKSQELSELILAIR 125 DG+ LI+ ++ FP I+V + +++PA + + G V K ++L A+ Sbjct: 62 DKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALA 121 Query: 126 AIHTGREYLSIAMSRELAALQAADPGARSEPEPAPPRRRRARNTPPSSDTLSDMPNLSPR 185 A+ G+++ ++SR L + A G + LSP+ Sbjct: 122 ALQKGKKFTPESVSRLLEKISAGGYGDK---------------------------RLSPK 154 Query: 186 EREVLRCCLDGLSVTDIAEKFARSVKTISCQKQSAFRKLGVRSD 229 E EVLR +G VT+IA+K RS+KTIS QK+SA KLGV +D Sbjct: 155 ESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVEND 198