BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3095.p (499 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1261 [T] COG2204 Response regulator containing CheY-like rece... 716 0.0 PA5125 [T] COG2204 Response regulator containing CheY-like recei... 574 e-163 ZglnG [T] COG2204 Response regulator containing CheY-like receiv... 557 e-158 STM4005 [T] COG2204 Response regulator containing CheY-like rece... 557 e-158 glnG [T] COG2204 Response regulator containing CheY-like receive... 556 e-158 >RSc1261 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Rso Ralstonia solanacearum Length = 502 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/501 (72%), Positives = 416/501 (83%), Gaps = 8/501 (1%) Query: 1 MKPIWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASG 60 MKPIWIVDDD+SIRWVLEKALARE+L ++SF++ARDA+ AL+ TPQVL+SD+RMPG SG Sbjct: 1 MKPIWIVDDDQSIRWVLEKALARESLLSRSFTNARDALNALEEETPQVLISDVRMPGGSG 60 Query: 61 LELLQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDES 120 L+LLQ +K +HPG+PVII+TA+SDLDSAV+AFQGGAFEYLAKPFDVD+AVELIRRAL+ES Sbjct: 61 LDLLQAIKGRHPGLPVIIMTAYSDLDSAVAAFQGGAFEYLAKPFDVDRAVELIRRALEES 120 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 LRE +I+ PEILGQAPAMQDVFRAIGRLSQSNVTVLITGESG+GKELVARALHKH Sbjct: 121 LREEEIDDRLGDAPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGTGKELVARALHKH 180 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRAS PF+ALNTAAIPKDLLESELFGHERGAFTGAQ MRRGRFEQAEGGTLFLDEIGDM Sbjct: 181 SPRASGPFIALNTAAIPKDLLESELFGHERGAFTGAQTMRRGRFEQAEGGTLFLDEIGDM 240 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 P DLQTRLLRVLSDGHFYRVGGH LKANVRVIAATHQNLE RV++GLFREDL+HRLNVI Sbjct: 241 PFDLQTRLLRVLSDGHFYRVGGHNPLKANVRVIAATHQNLETRVKDGLFREDLFHRLNVI 300 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 RLRLP+LRER EDI +LAR+FL +SA++LGVE KR+S +A+ ++ L FPGNVRQLENLC Sbjct: 301 RLRLPALRERPEDITLLARHFLQKSAKELGVEPKRMSDEALSHIATLPFPGNVRQLENLC 360 Query: 361 NWITVMAPGQTVEIKDLPQDLVEERVHA-PQPAQIVAA-------PASASALAAPLAYAE 412 NW+TVMAP QT+EIKDLP DLV P A+++ A P+ + A A A Sbjct: 361 NWLTVMAPAQTIEIKDLPHDLVRGASQMLPGTAELMVAGRAVAGEPSFGADAHAAGAEAP 420 Query: 413 AAPGATTAEAGSSSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIALKHTHGRKND 472 A GA + S W L EA ML + QP+VMD L R+FE A+++ AL T GR+ + Sbjct: 421 VAAGAAAGASAMSGWERALAGEAKAMLEAGQPDVMDALTRRFERAILEAALGVTRGRRVE 480 Query: 473 AAVRLGIGRNTITRKIQELGI 493 AA RLGIGRNTITRK+QELG Sbjct: 481 AATRLGIGRNTITRKLQELGF 501 >PA5125 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Pae Pseudomonas aeruginosa Length = 476 Score = 574 bits (1480), Expect = e-163, Method: Compositional matrix adjust. Identities = 296/500 (59%), Positives = 364/500 (72%), Gaps = 37/500 (7%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASGLEL 63 +WIVDDD SIRWVLEKAL +E + T SF SA + L P V++SDIRMPGASGL+L Sbjct: 7 VWIVDDDRSIRWVLEKALQQEGMTTVSFDSADSVIGRLGRQQPDVIISDIRMPGASGLDL 66 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDESLRE 123 L ++ HP +PVII+TA SDLDSAV+++QGGAFEYL KPFDVD+AV L++RA + + Sbjct: 67 LAQIRELHPRLPVIIMTAHSDLDSAVASYQGGAFEYLPKPFDVDEAVSLVKRANQHAQEQ 126 Query: 124 TDIEQGA--AQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHS 181 +E A A+TPEI+G+APAMQ+VFRAIGRLS SN+TVLI GESG+GKELVA ALH+HS Sbjct: 127 QGLELPANQARTPEIIGEAPAMQEVFRAIGRLSHSNITVLINGESGTGKELVAHALHRHS 186 Query: 182 PRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDMP 241 PRA+ PF+ALN AAIPKDL+ESELFGHE+GAFTGA A RRGRFEQA+GGTLFLDEIGDMP Sbjct: 187 PRAASPFIALNMAAIPKDLMESELFGHEKGAFTGAAAQRRGRFEQADGGTLFLDEIGDMP 246 Query: 242 LDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIR 301 D QTRLLRVL+DG FYRVGGH +K +VR+IAATHQNLE VR+G FREDL+HRLNVIR Sbjct: 247 ADTQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLESLVRDGKFREDLFHRLNVIR 306 Query: 302 LRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLCN 361 + +P L +R EDIP LAR+FL+++A++L VE K L + ++L L +PGNVRQLEN C Sbjct: 307 IHIPRLADRREDIPALARHFLSRAAQELAVEPKLLKAETEEYLKNLGWPGNVRQLENTCR 366 Query: 362 WITVMAPGQTVEIKDLPQDLVEERVHAPQPAQIVAAPASASALAAPLAYAEAAPGATTAE 421 WITVMA G+ V I DLP +L+ + PQ ++AP A Sbjct: 367 WITVMASGREVHIDDLPPELLTQ----PQ---------------------DSAPAA---- 397 Query: 422 AGSSSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGIGR 481 +W L A Q L Q ++D FE +I+ ALKHT GR+ DAAV LG GR Sbjct: 398 ----NWEQALRQWADQALGRGQSNLLDSAVPAFERIMIETALKHTAGRRRDAAVLLGWGR 453 Query: 482 NTITRKIQELG--IGGAEDD 499 NT+TRKI+ELG + GA+D+ Sbjct: 454 NTLTRKIKELGMNVDGADDE 473 >ZglnG [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains EcZ Escherichia coli O157:H7 EDL933 Length = 469 Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust. Identities = 282/492 (57%), Positives = 353/492 (71%), Gaps = 31/492 (6%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASGLEL 63 +W+VDDD SIRWVLE+ALA L +F + + + AL + TP VL+SDIRMPG GL L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGXEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDESLRE 123 L+ +K +HP +PVII+TA SDLD+AVSA+Q GAF+YL KPFD+D+AV L+ RA+ + Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 124 TDIE--QGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHS 181 Q T +I+G+APAMQDVFR IGRLS+S+++VLI GESG+GKELVA ALH+HS Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Query: 182 PRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDMP 241 PRA PF+ALN AAIPKDL+ESELFGHE+GAFTGA +R+GRFEQA+GGTLFLDEIGDMP Sbjct: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 Query: 242 LDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIR 301 LD+QTRLLRVL+DG FYRVGG+ +K +VR+IAATHQNLEQRV+EG FREDL+HRLNVIR Sbjct: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 Query: 302 LRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLCN 361 + LP LRER EDIP LAR+FL +AR+LGVEAK L P+ L++L +PGNVRQLEN C Sbjct: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 Query: 362 WITVMAPGQTVEIKDLPQDLVEERVHAPQPAQIVAAPASASALAAPLAYAEAAPGATTAE 421 W+TVMA GQ V I+DLP +L E V +T++ Sbjct: 366 WLTVMAAGQEVLIQDLPGELFESTV-----------------------------AESTSQ 396 Query: 422 AGSSSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGIGR 481 SW +LL A + L S ++ + E L+ AL+HT G K +AA LG GR Sbjct: 397 MQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGR 456 Query: 482 NTITRKIQELGI 493 NT+TRK++ELG+ Sbjct: 457 NTLTRKLKELGM 468 >STM4005 [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Sty Salmonella typhimurium LT2 Length = 469 Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust. Identities = 285/493 (57%), Positives = 357/493 (72%), Gaps = 33/493 (6%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASGLEL 63 +W+VDDD SIRWVLE+ALA L +F + + +AAL + TP VL+SDIRMPG GL L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALD---ES 120 L+ +K +HP +PVII+TA SDLD+AVSA+Q GAF+YL KPFD+D+AV L+ RA+ E Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 121 LRETDIEQGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKH 180 + +IE T +++G+APAMQDVFR IGRLS+S+++VLI GESG+GKELVA ALH+H Sbjct: 126 QQPRNIEVNGPTT-DMIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 Query: 181 SPRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDM 240 SPRA PF+ALN AAIPKDL+ESELFGHE+GAFTGA +R+GRFEQA+GGTLFLDEIGDM Sbjct: 185 SPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM 244 Query: 241 PLDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVI 300 PLD+QTRLLRVL+DG FYRVGG+ +K +VR+IAATHQNLE+RV+EG FREDL+HRLNVI Sbjct: 245 PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLERRVQEGKFREDLFHRLNVI 304 Query: 301 RLRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLC 360 R+ LP LRER EDIP LAR+FL +AR+LGVEAK L P+ L++L +PGNVRQLEN C Sbjct: 305 RIHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETETALTRLAWPGNVRQLENTC 364 Query: 361 NWITVMAPGQTVEIKDLPQDLVEERVHAPQPAQIVAAPASASALAAPLAYAEAAPGATTA 420 W+TVMA GQ V I+DLP +L E + P S S L Sbjct: 365 RWLTVMAAGQEVLIQDLPGELFE-----------ASTPDSPSHLP--------------- 398 Query: 421 EAGSSSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGIG 480 SW +LL A + L S ++ + E L+ AL+HT G K +AA LG G Sbjct: 399 ---PDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWG 455 Query: 481 RNTITRKIQELGI 493 RNT+TRK++ELG+ Sbjct: 456 RNTLTRKLKELGM 468 >glnG [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Eco Escherichia coli K12 Length = 469 Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust. Identities = 282/492 (57%), Positives = 353/492 (71%), Gaps = 31/492 (6%) Query: 4 IWIVDDDESIRWVLEKALARENLATQSFSSARDAMAALQNGTPQVLVSDIRMPGASGLEL 63 +W+VDDD SIRWVLE+ALA L +F + + + AL + TP VL+SDIRMPG GL L Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65 Query: 64 LQTVKAKHPGIPVIIITAFSDLDSAVSAFQGGAFEYLAKPFDVDKAVELIRRALDESLRE 123 L+ +K +HP +PVII+TA SDLD+AVSA+Q GAF+YL KPFD+D+AV L+ RA+ + Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQ 125 Query: 124 TDIE--QGAAQTPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHS 181 Q T +I+G+APAMQDVFR IGRLS+S+++VLI GESG+GKELVA ALH+HS Sbjct: 126 QQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS 185 Query: 182 PRASQPFVALNTAAIPKDLLESELFGHERGAFTGAQAMRRGRFEQAEGGTLFLDEIGDMP 241 PRA PF+ALN AAIPKDL+ESELFGHE+GAFTGA +R+GRFEQA+GGTLFLDEIGDMP Sbjct: 186 PRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP 245 Query: 242 LDLQTRLLRVLSDGHFYRVGGHQSLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIR 301 LD+QTRLLRVL+DG FYRVGG+ +K +VR+IAATHQNLEQRV+EG FREDL+HRLNVIR Sbjct: 246 LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIR 305 Query: 302 LRLPSLRERSEDIPILARYFLAQSARQLGVEAKRLSPQAMQFLSQLEFPGNVRQLENLCN 361 + LP LRER EDIP LAR+FL +AR+LGVEAK L P+ L++L +PGNVRQLEN C Sbjct: 306 VHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCR 365 Query: 362 WITVMAPGQTVEIKDLPQDLVEERVHAPQPAQIVAAPASASALAAPLAYAEAAPGATTAE 421 W+TVMA GQ V I+DLP +L E V +T++ Sbjct: 366 WLTVMAAGQEVLIQDLPGELFESTV-----------------------------AESTSQ 396 Query: 422 AGSSSWISLLETEAAQMLASEQPEVMDILGRQFEAALIKIALKHTHGRKNDAAVRLGIGR 481 SW +LL A + L S ++ + E L+ AL+HT G K +AA LG GR Sbjct: 397 MQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGR 456 Query: 482 NTITRKIQELGI 493 NT+TRK++ELG+ Sbjct: 457 NTLTRKLKELGM 468