BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3092.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02797 [R] COG0486 Predicted GTPase Sme Sinorhizobium meliloti       28   3.8  
MA4193 [R] COG2144 Selenophosphate synthetase-related proteins M...    28   4.4  
APE0969 Non COG                                                        28   5.2  
mlr3843 [C] COG0372 Citrate synthase Mlo Mesorhizobium loti            28   7.1  

>SMc02797 [R] COG0486 Predicted GTPase Sme Sinorhizobium meliloti
          Length = 376

 Score = 28.5 bits (62), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 21  ILEALPENVHIVYVAVSHGKGHPAWA 46
           I E LPENV ++ VA    +  P+WA
Sbjct: 249 IDEVLPENVPVIRVATKVDRPSPSWA 274


>MA4193 [R] COG2144 Selenophosphate synthetase-related proteins Mac
           Methanosarcina acetivorans str.C2A
          Length = 332

 Score = 28.1 bits (61), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 11  SASCEQLCTEILEALPENVHIVYVAVSHGKGHP 43
           SA+  Q C E++E L E V    V V  G  HP
Sbjct: 104 SANSSQACRELMEGLAEGVRKFGVPVVGGHVHP 136


>APE0969 Non COG
          Length = 532

 Score = 28.1 bits (61), Expect = 5.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 8   ARLSASCEQLCTEILEALPENVHIVYVAVSHGKGHPAWADIRYRMSPHRTPAVMDDFMQQ 67
           A+ S + +Q+  ++LEAL  N+ I YV+V   + +   A+  YR+     P  +  F+++
Sbjct: 268 AQGSETAQQVVNQVLEALNSNIRIDYVSVEDDESN---AERSYRVVGIVDPEGVFSFLKE 324


>mlr3843 [C] COG0372 Citrate synthase Mlo Mesorhizobium loti
          Length = 379

 Score = 27.7 bits (60), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 41  GHPAWADIRYRMSPHRTPAVMDDFMQQLDAAIQACTGLMPRIRCFAYAA 89
           GHP + D   R +       +D+ +QQL+ A  A TG  P I  FA AA
Sbjct: 283 GHPLYPDGDPRTTALSAAIPVDETLQQLEKAAIAMTGARPNI-DFALAA 330