BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3078.p (255 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1593 [L] COG0708 Exonuclease III Rso Ralstonia solanacearum 333 2e-91 XF1933 [L] COG0708 Exonuclease III Xfa Xylella fastidiosa 9a5c 271 1e-72 all5306 [L] COG0708 Exonuclease III Nos Nostoc sp. PCC 7120 261 9e-70 sll1854 [L] COG0708 Exonuclease III Syn Synechocystis 261 1e-69 NMB0399 [L] COG0708 Exonuclease III Nme Neisseria meningitidis MC58 238 9e-63 >RSc1593 [L] COG0708 Exonuclease III Rso Ralstonia solanacearum Length = 269 Score = 333 bits (854), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 163/268 (60%), Positives = 198/268 (73%), Gaps = 13/268 (4%) Query: 1 MKIATWNVNSLKVRLPQVLKWLEE-----NPVDVLCLQETKLTDDKFPAAEIAAAGYLVE 55 M++ATWNVNSLKVRLP VL+WL E P+D+LCLQE KL DD++P AE+ AAGY Sbjct: 1 MRVATWNVNSLKVRLPHVLQWLGEREADATPIDLLCLQELKLPDDRYPLAELEAAGYASL 60 Query: 56 FSGQKTYNGVAILSRHPM----NDVVKNNPLFPDEQQRIIAATIE----GVRYVCAYIPN 107 F+GQKTYNGVAIL+R DVV+N P F DEQQR++AAT + VR + AY PN Sbjct: 61 FTGQKTYNGVAILARKAAMPEGRDVVRNIPDFADEQQRVVAATYDVAGGPVRVISAYFPN 120 Query: 108 GQSLDSEKYPYKLNWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLV 167 GQ+LDS+K YK+ WLAAL +WL E A++PRL LLGD+NIAP+DRDVHDP W+G LV Sbjct: 121 GQALDSDKMVYKMRWLAALQDWLQAEMAAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLV 180 Query: 168 SEPEREAFRKLQALGLTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPR 227 S ER AFR L++ GL D++R+FEQ +K++SWWDYR FR N GLRIDHILLS L Sbjct: 181 SPEERAAFRALESAGLVDAFRMFEQEDKLFSWWDYRLFAFRRNAGLRIDHILLSPNLARL 240 Query: 228 CTACVIDKVPRKWEQPSDHAPVIATLAD 255 C +C ID+VPR WEQPSDH PV+A L D Sbjct: 241 CESCHIDRVPRGWEQPSDHTPVVAALRD 268 >XF1933 [L] COG0708 Exonuclease III Xfa Xylella fastidiosa 9a5c Length = 264 Score = 271 bits (693), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 141/255 (55%), Positives = 177/255 (69%), Gaps = 1/255 (0%) Query: 1 MKIATWNVNSLKVRLPQVLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQK 60 M+IA+WNVNSL VRL Q+ +WL E DVL LQETKL D +FP A +AA GY+ ++GQK Sbjct: 3 MRIASWNVNSLNVRLSQLQQWLVEAAPDVLGLQETKLEDHQFPEAALAALGYVSVYAGQK 62 Query: 61 TYNGVAILSRHPMNDVVKNNPLFPDEQQRIIAATIEGVRYVCAYIPNGQSLDSEKYPYKL 120 TYNGVA+L+R + DV P F D Q+R+IAAT++G+R V Y+ NGQ + +EKY YKL Sbjct: 63 TYNGVALLARVALEDVQVGIPGFEDVQRRVIAATVDGIRVVNLYVVNGQEVGTEKYAYKL 122 Query: 121 NWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAW-QGQVLVSEPEREAFRKLQ 179 +WL A++ WLA+E PRL +LGD+NIAP+ RDV+DP W + +L S ER A KL Sbjct: 123 SWLDAVYHWLAEELQRYPRLVVLGDFNIAPDARDVYDPQVWNEDHILTSTTERVALGKLL 182 Query: 180 ALGLTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACVIDKVPRK 239 LGL D +RL Q ++SWWDYRQ FR NRGLRID L+SE L + A ID VPR Sbjct: 183 GLGLHDGFRLHHQDTGIFSWWDYRQASFRRNRGLRIDLTLVSEALRAQVVASGIDCVPRG 242 Query: 240 WEQPSDHAPVIATLA 254 WE+PSDHAP LA Sbjct: 243 WERPSDHAPAWIELA 257 >all5306 [L] COG0708 Exonuclease III Nos Nostoc sp. PCC 7120 Length = 260 Score = 261 bits (668), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 127/260 (48%), Positives = 164/260 (63%), Gaps = 7/260 (2%) Query: 1 MKIATWNVNSLKVRLPQVLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQK 60 MKIATWNVNS++ RL QVL WL++NPVDVLCLQETK+ DD FP + GY SGQK Sbjct: 1 MKIATWNVNSIRTRLEQVLDWLKQNPVDVLCLQETKVIDDDFPRSPFENLGYHSYISGQK 60 Query: 61 TYNGVAILSRHPMNDVVKN-NPLFPD------EQQRIIAATIEGVRYVCAYIPNGQSLDS 113 YNGVA++S+ P+ DV P+ PD EQ+R+I I+GVR V Y+PNG ++ S Sbjct: 61 AYNGVALISQQPLTDVTTGFTPILPDIEPIWDEQKRVITGVIDGVRIVNLYVPNGSAIAS 120 Query: 114 EKYPYKLNWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPERE 173 EKY YKL WL L E+L P + + GD+NIA ED+D+H+ V + ++ S ER+ Sbjct: 121 EKYEYKLRWLTVLREYLRSLLLLQPAICICGDFNIALEDKDIHEKVKAENHIMASLAERQ 180 Query: 174 AFRKLQALGLTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACVI 233 A R + LG D++R F +SWWDYR FR N+G RIDH L+ L + +C I Sbjct: 181 ALRDVLELGFADAFRKFTTEGGHFSWWDYRAASFRRNQGWRIDHHYLTPVLYAQAKSCTI 240 Query: 234 DKVPRKWEQPSDHAPVIATL 253 D PRK QPSDH PVI + Sbjct: 241 DVSPRKLTQPSDHTPVIVEI 260 >sll1854 [L] COG0708 Exonuclease III Syn Synechocystis Length = 275 Score = 261 bits (667), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 130/263 (49%), Positives = 167/263 (63%), Gaps = 10/263 (3%) Query: 1 MKIATWNVNSLKVRLPQVLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQK 60 M IA+WNVNS++ R +L WL NPVDVLCLQETK+ D+ FP AGY SGQK Sbjct: 11 MDIASWNVNSVRSRQQHILDWLGTNPVDVLCLQETKVVDEDFPRQPFEEAGYHCHISGQK 70 Query: 61 TYNGVAILSRHPMNDVVKN-----NPLFP---DEQQRIIAATIEGVRYVCAYIPNGQSLD 112 +YNGVAI SR P+ DV P DEQ+R+I+ +GVR V Y+PNG +LD Sbjct: 71 SYNGVAIFSREPLQDVKIGFAALVEPALTGDLDEQKRVISGVYDGVRIVNLYVPNGSALD 130 Query: 113 SEKYPYKLNWLAALHEWLAQ-EKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPE 171 SEKY YKL WL L +L Q ++ P + GD+NIAPEDRD+HDPV + ++ + E Sbjct: 131 SEKYLYKLRWLNLLQTYLEQLRRSDTPEFLVCGDFNIAPEDRDIHDPVGRENHIMATAME 190 Query: 172 REAFRKLQALG-LTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTA 230 REA ++ A+ L D++R F + YSWWDYR GF NRG RIDH L+ +L + Sbjct: 191 REALTEVLAIANLQDAFRKFTEETGHYSWWDYRTRGFSRNRGWRIDHHYLTPQLYDQAQK 250 Query: 231 CVIDKVPRKWEQPSDHAPVIATL 253 C ID+ PR WE+PSDHAPV+ T+ Sbjct: 251 CWIDREPRGWEKPSDHAPVVVTI 273 >NMB0399 [L] COG0708 Exonuclease III Nme Neisseria meningitidis MC58 Length = 256 Score = 238 bits (607), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 127/252 (50%), Positives = 158/252 (62%), Gaps = 1/252 (0%) Query: 1 MKIATWNVNSLKVRLPQVLKWLEENPVDVLCLQETKLTDDKFPAAEIAAAGYLVEFSGQK 60 MKI TWNVNSL VRLPQV L +NP D+L LQE KL DKFPAA + G+ +SGQK Sbjct: 1 MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQK 60 Query: 61 TYNGVAILSRHPMNDVVKNNPLFPDE-QQRIIAATIEGVRYVCAYIPNGQSLDSEKYPYK 119 TYNGVAI+SR DV P PD+ Q+R+IAAT+ GVR + Y NG++LDS K+ YK Sbjct: 61 TYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGVRVINVYCVNGEALDSPKFKYK 120 Query: 120 LNWLAALHEWLAQEKASNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAFRKLQ 179 W AAL E++ E + +L LLGD+NIAP D D +DP W ++ S ER+ F+ L Sbjct: 121 EQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLL 180 Query: 180 ALGLTDSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACVIDKVPRK 239 LGLTDS R Y+W+DYR F+ GLRIDHIL+S + +D R Sbjct: 181 DLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETRA 240 Query: 240 WEQPSDHAPVIA 251 E+PSDHAPV A Sbjct: 241 LERPSDHAPVTA 252