BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3076.p         (255 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1286 [M] COG3713 Outer membrane protein V Sty Salmonella typh...    69   1e-11
ZyiaT [M] COG3713 Outer membrane protein V EcZ Escherichia coli ...    68   2e-11
ECs4460 [M] COG3713 Outer membrane protein V Ecs Escherichia col...    68   2e-11
yiaT [M] COG3713 Outer membrane protein V Eco Escherichia coli K12     68   2e-11
ZyeaF [M] COG3713 Outer membrane protein V EcZ Escherichia coli ...    67   4e-11

>STM1286 [M] COG3713 Outer membrane protein V Sty Salmonella typhimurium LT2
          Length = 248

 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 76/147 (51%), Gaps = 1/147 (0%)

Query: 109 LHRRSNPIPLGLGTYQETPFGAFFLNVFRD-FNTSHGTLAEAIYAAQVDLGRVSIYPEAG 167
           L RR + +  G+     T +G    ++  D  + S+G + +  +  +   G +++ P  G
Sbjct: 102 LDRRKSTMMAGVSYAHHTQYGFLRTSLAGDTLDNSNGIVWDLAWLYRYTNGGLTLTPGIG 161

Query: 168 VEYRSSSYNDYYFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKW 227
           VE+ S + NDYY+GVS  ES+ SGLR Y+   S +P   L+A+   +G+W +    R   
Sbjct: 162 VEWNSENQNDYYYGVSRKESSRSGLRGYNPNDSWNPYLELSANYNFAGNWSVYGTARYTR 221

Query: 228 LDNTVSDSPLVRRRTDDTAIVALSYHF 254
           L + ++DSP+V +         ++Y F
Sbjct: 222 LSDEITDSPMVDKSWTGILSTGVTYRF 248


>ZyiaT [M] COG3713 Outer membrane protein V EcZ Escherichia coli O157:H7
           EDL933
          Length = 246

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 8/203 (3%)

Query: 60  TLALPYAYFDYGRFFARVDTFGIKTARMGYGYLELAGRVNVEGFD-------ADHGLHRR 112
           T A+P   ++   F+ R  T G   ++     L L        FD       A   L +R
Sbjct: 44  TKAIPLISYEGDSFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPADNDDYAMQQLDKR 103

Query: 113 SNPIPLGLGTYQETPFGAFFLNVFRD-FNTSHGTLAEAIYAAQVDLGRVSIYPEAGVEYR 171
            +    G+  Y    +G    +   D  + S+G + E     ++ +GR+S+ P  GV Y 
Sbjct: 104 DSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYY 163

Query: 172 SSSYNDYYFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKWLDNT 231
             +++DYY+G+S SES  SGL  YS   +  P   L A  P+     L        L   
Sbjct: 164 DENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEE 223

Query: 232 VSDSPLVRRRTDDTAIVALSYHF 254
           ++DSP++ R    T +  +S+ F
Sbjct: 224 ITDSPMIDRNESFTFVTGVSWRF 246


>ECs4460 [M] COG3713 Outer membrane protein V Ecs Escherichia coli O157:H7
          Length = 246

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 8/203 (3%)

Query: 60  TLALPYAYFDYGRFFARVDTFGIKTARMGYGYLELAGRVNVEGFD-------ADHGLHRR 112
           T A+P   ++   F+ R  T G   ++     L L        FD       A   L +R
Sbjct: 44  TKAIPLISYEGDSFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPADNDDYAMQQLDKR 103

Query: 113 SNPIPLGLGTYQETPFGAFFLNVFRD-FNTSHGTLAEAIYAAQVDLGRVSIYPEAGVEYR 171
            +    G+  Y    +G    +   D  + S+G + E     ++ +GR+S+ P  GV Y 
Sbjct: 104 DSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYY 163

Query: 172 SSSYNDYYFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKWLDNT 231
             +++DYY+G+S SES  SGL  YS   +  P   L A  P+     L        L   
Sbjct: 164 DENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEE 223

Query: 232 VSDSPLVRRRTDDTAIVALSYHF 254
           ++DSP++ R    T +  +S+ F
Sbjct: 224 ITDSPMIDRNESFTFVTGVSWRF 246


>yiaT [M] COG3713 Outer membrane protein V Eco Escherichia coli K12
          Length = 246

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 8/203 (3%)

Query: 60  TLALPYAYFDYGRFFARVDTFGIKTARMGYGYLELAGRVNVEGFD-------ADHGLHRR 112
           T A+P   ++   F+ R  T G   ++     L L        FD       A   L +R
Sbjct: 44  TKAIPLISYEGDTFYVRQTTLGFILSQSEKNELSLTASWMPLEFDPTDNDDYAMQQLDKR 103

Query: 113 SNPIPLGLGTYQETPFGAFFLNVFRD-FNTSHGTLAEAIYAAQVDLGRVSIYPEAGVEYR 171
            +    G+  Y    +G    +   D  + S+G + E     ++ +GR+S+ P  GV Y 
Sbjct: 104 DSTAMAGVAWYHHERWGTVKASAAADVLDNSNGWVGELSVFHKMQIGRLSLTPALGVLYY 163

Query: 172 SSSYNDYYFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKWLDNT 231
             +++DYY+G+S SES  SGL  YS   +  P   L A  P+     L        L   
Sbjct: 164 DENFSDYYYGISESESRRSGLASYSAQDAWVPYVSLTAKYPIGEHVVLMASAGYSELPEE 223

Query: 232 VSDSPLVRRRTDDTAIVALSYHF 254
           ++DSP++ R    T +  +S+ F
Sbjct: 224 ITDSPMIDRNESFTFVTGVSWRF 246


>ZyeaF [M] COG3713 Outer membrane protein V EcZ Escherichia coli O157:H7
           EDL933
          Length = 248

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 109 LHRRSNPIPLGLGTYQETPFGAFFLNVFRD-FNTSHGTLAEAIYAAQVDLGRVSIYPEAG 167
           L  R + +  GL     T +G     +  D  + S+G + +  +  +   G +++ P  G
Sbjct: 102 LDDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGIG 161

Query: 168 VEYRSSSYNDYYFGVSASESAASGLRQYSVGSSTSPIFGLAADVPLSGDWHLNLHWRRKW 227
           V++ S + N+YY+GVS  ESA SGLR Y+   S SP   L+A     GDW +    R   
Sbjct: 162 VQWNSENQNEYYYGVSRKESARSGLRGYNSNDSWSPYLELSASYNFLGDWSVYGTARYTR 221

Query: 228 LDNTVSDSPLVRRRTDDTAIVALSYHF 254
           L + V+DSP+V +         ++Y F
Sbjct: 222 LSDEVTDSPIVDKSWTGLISTGITYKF 248