BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3060.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1401 Non COG 163 3e-40 RSc0742 Non COG 154 2e-37 YPO1681 [NT] COG3143 Chemotaxis protein Ype Yersinia pestis 148 1e-35 ZcheZ [NT] COG3143 Chemotaxis protein EcZ Escherichia coli O157:... 146 4e-35 ECs2591 [NT] COG3143 Chemotaxis protein Ecs Escherichia coli O15... 146 4e-35 >RSp1401 Non COG Length = 220 Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 136/232 (58%), Gaps = 16/232 (6%) Query: 22 MTASDGGAAAPAGTEPAADSAQPDAEDQSDKPMYERLGGIVRLLHDSMRELGYDRSLTDV 81 M+ GA A A AA PD M +R+G + R+LH+SMRELG D+ + Sbjct: 1 MSEMSDGARAGADKTAAAPEGMPD--------MLQRIGHLTRMLHESMRELGLDKGVEKA 52 Query: 82 AEQIGDAQSRLEHIATLTEQAANKVLNALDSGMPAQDRLQEQAKDINARWTKLYAGQMSI 141 A I DA+ RL +IA +TEQAA +VLNA+D+ P QD+L+ +A+++ RW Q+ Sbjct: 53 ASAIPDARDRLNYIANMTEQAATRVLNAIDAARPVQDQLEGEAEELVTRWQSWMDRQLGD 112 Query: 142 DEFKALAGDSQKFSSSVMESTEAEKARMLEIMMAQDFQDITGQLIKKIVAITATAERELA 201 DE ++L + F SV + T +++EI+MAQDFQD+TGQ+IKK++ + E +L Sbjct: 113 DEIRSLVEITNGFLRSVPQKTRDTNHQLMEILMAQDFQDLTGQVIKKVLDVVQLIESQLV 172 Query: 202 QLLRDNAPPEVKAQMDAEKPVSLMNGPSVG----GTAMAQDDVDDLLDSLGF 249 +L DNAP ++ ++ + SL+NGP + Q+ VDDLL SLGF Sbjct: 173 GILLDNAPEHLRVEVGS----SLLNGPQINPDHPDVVANQEQVDDLLASLGF 220 >RSc0742 Non COG Length = 217 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 131/220 (59%), Gaps = 10/220 (4%) Query: 34 GTEPAADSAQPDAEDQSDKPMYERLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLE 93 G+ AD A DAE D M +R+G + R+L +S+RELG D+ + A I DA+ RL Sbjct: 4 GSPVQADRAAADAEPLPD--MLQRIGYLTRMLRESLRELGLDKGIERAASAIPDARDRLN 61 Query: 94 HIATLTEQAANKVLNALDSGMPAQDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQK 153 ++A +TEQAA + LNA+D+ P QD L +A+ + RW ++S +E + L G+++ Sbjct: 62 YVANMTEQAAMRALNAIDAARPVQDALAGEAEALVRRWQAWMDRRLSDEEIRDLVGETRG 121 Query: 154 FSSSVMESTEAEKARMLEIMMAQDFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVK 213 F V + T +++EI+MAQDFQD+TGQ+IKK++ + E EL +L DNAP Sbjct: 122 FLRDVPQKTRDTNQQLMEILMAQDFQDLTGQVIKKVLDLIQFIETELIGILTDNAP---- 177 Query: 214 AQMDAEKPVSLMNGPSVG----GTAMAQDDVDDLLDSLGF 249 A AE +L+NGP V Q+ VDDLL+SLGF Sbjct: 178 AHRSAEVAPTLLNGPQVNPDPPDVVAGQEQVDDLLESLGF 217 >YPO1681 [NT] COG3143 Chemotaxis protein Ype Yersinia pestis Length = 214 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/210 (39%), Positives = 136/210 (64%), Gaps = 10/210 (4%) Query: 45 DAEDQSDKPMYERLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAAN 104 DA SD + R+G + R+L DS+RELG D+++ AE I DA+ RL+++ +T QAA Sbjct: 10 DAASASD--IISRIGSLTRMLRDSLRELGLDQAIAQAAEAIPDARDRLDYVVHMTAQAAE 67 Query: 105 KVLNALDSGMPAQDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEA 164 + LN +++ P Q+ L+ AK + RW + +A + + + ++L D++++ + V + T Sbjct: 68 RALNCVEAAQPRQNELESSAKALKIRWDEWFANPIELSDARSLVTDTREYLAVVPQHTSF 127 Query: 165 EKARMLEIMMAQDFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEKPV-S 223 A++LEIMMAQDFQD+TGQ+IK+++ + E++L +L +N P++ ++ +KP S Sbjct: 128 TNAQLLEIMMAQDFQDLTGQVIKRMMDVVQEIEKQLLMVLMENI-PDIPSK--PQKPTDS 184 Query: 224 LMNGP----SVGGTAMAQDDVDDLLDSLGF 249 L+NGP +V G +QD VDDLLDSLGF Sbjct: 185 LLNGPQMDKNVAGVIASQDQVDDLLDSLGF 214 >ZcheZ [NT] COG3143 Chemotaxis protein EcZ Escherichia coli O157:H7 EDL933 Length = 214 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 133/208 (63%), Gaps = 6/208 (2%) Query: 46 AEDQSDKPMYERLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAANK 105 A++ S + R+G + R+L DS+RELG D+++ + AE I DA+ RL ++ +T QAA + Sbjct: 9 ADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAER 68 Query: 106 VLNALDSGMPAQDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEAE 165 LN++++ P QD++++ AK + RW +A + + + + L D++KF + V T Sbjct: 69 ALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRKFLADVPAHTSFT 128 Query: 166 KARMLEIMMAQDFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEKPVSLM 225 A++LEIMMAQDFQD+TGQ+IK+++ + ER+L +L +N PE +++ E SL+ Sbjct: 129 NAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENI-PEQESRPKRENQ-SLL 186 Query: 226 NGPSV----GGTAMAQDDVDDLLDSLGF 249 NGP V G +QD VDDLLDSLGF Sbjct: 187 NGPQVDTSKAGVVASQDQVDDLLDSLGF 214 >ECs2591 [NT] COG3143 Chemotaxis protein Ecs Escherichia coli O157:H7 Length = 214 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 133/208 (63%), Gaps = 6/208 (2%) Query: 46 AEDQSDKPMYERLGGIVRLLHDSMRELGYDRSLTDVAEQIGDAQSRLEHIATLTEQAANK 105 A++ S + R+G + R+L DS+RELG D+++ + AE I DA+ RL ++ +T QAA + Sbjct: 9 ADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAER 68 Query: 106 VLNALDSGMPAQDRLQEQAKDINARWTKLYAGQMSIDEFKALAGDSQKFSSSVMESTEAE 165 LN++++ P QD++++ AK + RW +A + + + + L D++KF + V T Sbjct: 69 ALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRKFLADVPAHTSFT 128 Query: 166 KARMLEIMMAQDFQDITGQLIKKIVAITATAERELAQLLRDNAPPEVKAQMDAEKPVSLM 225 A++LEIMMAQDFQD+TGQ+IK+++ + ER+L +L +N PE +++ E SL+ Sbjct: 129 NAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLENI-PEQESRPKRENQ-SLL 186 Query: 226 NGPSV----GGTAMAQDDVDDLLDSLGF 249 NGP V G +QD VDDLLDSLGF Sbjct: 187 NGPQVDTSKAGVVASQDQVDDLLDSLGF 214