BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3052.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2382 Non COG                                                       112   5e-25
RSc2071 Non COG                                                        55   5e-08
RSc1480 Non COG                                                        49   4e-06
PA4765 [J] COG2913 Small protein A (tmRNA-binding) Pae Pseudomon...    32   0.83 
PA1191 [O] COG2214 DnaJ-class molecular chaperone Pae Pseudomona...    32   0.99 

>RSc2382 Non COG
          Length = 180

 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 78/130 (60%), Gaps = 2/130 (1%)

Query: 43  LQKGISSEADVRGVMGQPDTVWEDGGGARTLEYPKGPEGIRTWMFAIGASGTLIDYRQVL 102
           +Q G S+EADVR   GQPD +WE+  G R LEYP+GPEG  TW+  IG  G +    Q+L
Sbjct: 46  IQAGQSTEADVRATAGQPDMIWENEDGTRQLEYPRGPEGTSTWLVTIGPDGRVRGIDQLL 105

Query: 103 TQEHFDTIRAGMTADQIRREFGRPRSVVQFARKNEEVWDWKYHYVHEDR-LFNVHFDMNT 161
           + ++F  +R G T D +RR  G+P  V  F  K EEVW +++     +R  FNVHF  + 
Sbjct: 106 SADNFGRVRPGQTRDDVRRLLGKPTKVEAFRLKQEEVWGYRWMENPTERAFFNVHFGPDG 165

Query: 162 RQVVRTSISE 171
           R V  TS S+
Sbjct: 166 R-VTTTSRSD 174


>RSc2071 Non COG
          Length = 173

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 53  VRGVMGQPDTVWEDGGGARTLEYPKGPEGIRTWMFAIGASGTLIDYRQVLTQEHFDTIRA 112
           V    G+P   +   GG     YP  P G  T+     ASG L+ +RQ+LT   F  IR 
Sbjct: 42  VEARFGKPPEQYPRAGGGTRWLYPTQPYGQFTYAADFDASGRLVSFRQILTTLDFAQIRV 101

Query: 113 GMTADQ-IRREFGRPRSVVQFARKNEEVWDWKY 144
           G +  Q + R FG+P     F   + +VW +++
Sbjct: 102 GTSTQQDVLRMFGKPEETAYFRLMDRQVWSYRF 134


>RSc1480 Non COG
          Length = 177

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 51  ADVRGVMGQPDTVWEDGGGARTLEYPKGPEGIRTWMFAIGASGTLIDYRQVLTQEHFDTI 110
           A V+   G P   +   GG R L YP  P G  T+     A+G L+ +RQVL    F   
Sbjct: 43  AAVQAQFGPPRESYPLDGGTRWL-YPTQPYGQFTYAADFDAAGKLVAFRQVLRSLEFAQA 101

Query: 111 RAGM-TADQIRREFGRPRSVVQFARKNEEVWDWKY 144
           R  + T D +   FG+P     F+R +  VW +++
Sbjct: 102 RVDVWTRDDVLHHFGKPVETAYFSRMDRLVWSYRF 136


>PA4765 [J] COG2913 Small protein A (tmRNA-binding) Pae Pseudomonas
           aeruginosa
          Length = 176

 Score = 31.6 bits (70), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 96  IDYRQ--VLTQEHFDTIRAGMTADQIRREFGRPRSVVQFARKNEEVWDWKY 144
           ID +Q  V+TQ+  D +R GMT  Q+R   G P  V  F   +   WD+ Y
Sbjct: 30  IDIQQGNVVTQDMIDQLRPGMTRRQVRFIMGNPLIVDTF---HANRWDYLY 77


>PA1191 [O] COG2214 DnaJ-class molecular chaperone Pae Pseudomonas
           aeruginosa
          Length = 197

 Score = 31.6 bits (70), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 31  NGNPIEEFGLDKLQKGISSEADVRGVMGQPDTVWEDGGGARTLEYPKGPEGIRTWMFAIG 90
            G+P+ ++ LD    G +SEADV  ++    + W    G+   E       +     A+ 
Sbjct: 101 QGDPLRDYYLDLRHLGETSEADVERLL---QSFWTRMQGS---EEKAAALALFELEGAVD 154

Query: 91  ASGTLIDYRQVLTQEHFDTIRAGMTA---------DQIRREFGRP 126
                + YRQ+++Q H D  R G TA         + ++R + RP
Sbjct: 155 YPAIKLRYRQLVSQHHPD--RGGSTARLQSINKAMEILQRYYSRP 197