BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3051.p (276 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0598 [G] COG0395 ABC-type sugar transport system, permease com... 184 2e-46 AGpA79 [G] COG0395 ABC-type sugar transport system, permease com... 167 2e-41 SMb20233 [G] COG0395 ABC-type sugar transport system, permease c... 159 5e-39 BH1078 [G] COG0395 ABC-type sugar transport system, permease com... 159 9e-39 Rv2317 [G] COG0395 ABC-type sugar transport system, permease com... 158 1e-38 >TM0598 [G] COG0395 ABC-type sugar transport system, permease component Tma Thermotoga maritima Length = 277 Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 98/221 (44%), Positives = 141/221 (63%), Gaps = 1/221 (0%) Query: 56 LQNFANAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQ 115 QN+ +AW AAPFPRY+ NTF + T ++V A+LAAYAF+ F G + +F L L Sbjct: 58 FQNYVDAWNAAPFPRYYFNTFFVATTTTLLEVVTASLAAYAFSWMVFPGRDFIFGLFLAT 117 Query: 116 LMVMPDILIVENYQTMNLLGLRDTILAIGLPYFASAFGIFLLRQTFKTVPRELDEAATVE 175 +M+ ++L+V N+ T++ LG DT A+ +P+ S F IFLLRQ F T+PREL +AA ++ Sbjct: 118 MMIPGEVLLVPNFITISKLGWIDTYYALIIPWIVSVFAIFLLRQHFLTIPRELFDAAKID 177 Query: 176 GASPWQILMQVYVPLAKPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSST 235 G S W+ L Q+ VPL+KP I L+ WN FLW LIVTNS + R L VGLQ FSS Sbjct: 178 GCSHWRFLWQMVVPLSKPAVITSALLKFVGSWNAFLWVLIVTNSEKYRTLPVGLQAFSS- 236 Query: 236 DQGVDWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 D G ++++ AA + P+++ F+ Q+ F+Q R G++ Sbjct: 237 DVGTQYNLLMAAATFSILPVVILFIFTQKYFIQGIARTGLK 277 >AGpA79 [G] COG0395 ABC-type sugar transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 269 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/262 (35%), Positives = 147/262 (56%), Gaps = 9/262 (3%) Query: 20 AWVLALLWLLPLLYALWTAFH--PAAYATRLVLDAPLTLQNFANAWQAAPFPRYFLNTFL 77 A V LL+L P+LY++W +F A YA L TL N+A A F RY LN+ + Sbjct: 12 ALVAGLLFLSPVLYSIWMSFQTVDAYYAGEL----GFTLDNYARAVGQYNFARYLLNSLI 67 Query: 78 LVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLR 137 + M+ + AT+AAYAFAR++F+G + +F + LM+ I ++ NY T+ +GL Sbjct: 68 VSAMVTLLGITFATMAAYAFARYSFKGGDFLFAATVATLMIPSHISLIPNYLTLAKVGLL 127 Query: 138 DTILAIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASPWQILMQVYVPLAKPIYIA 197 D+ + LP ++ F F LRQ + +P+ LDEAA ++GA+ Q+L ++ VPL++P + Sbjct: 128 DSYAGLILPAISNGFAAFFLRQYIRGIPKALDEAAYMDGATSLQVLWRIIVPLSRPAIAS 187 Query: 198 FGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQG---VDWSIITAATLMTSAP 254 L T WNN++WPL+ + L +GL + G +DW ++ AA+ +T P Sbjct: 188 MALYIFMTEWNNYIWPLVAVGKQDMYTLQIGLARLYRINPGEGLIDWPLVMAASTITILP 247 Query: 255 LLLAFLLFQRQFVQSFMRAGIR 276 +LL FLL +R V+ ++ Sbjct: 248 VLLGFLLVERHLVRGITMGAVK 269 >SMb20233 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 282 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 94/277 (33%), Positives = 156/277 (56%), Gaps = 9/277 (3%) Query: 7 PFAERH-----RALETISAWVLALLWLLPLLYALWTAFHPAA--YATRLVLDAPLTLQNF 59 PF R R L + +LA + L PLL+ + AF PAA +++ L+ AP TL NF Sbjct: 8 PFFSRSQVTLVRGLWMVVTAILAFMTLFPLLWIVSIAFKPAAESFSSNLIPQAP-TLDNF 66 Query: 60 ANAWQAAPFPRYFLNTFLLVTMILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVM 119 PF RY +N+FL+ + L T+A YA AR F G VMF+ + +V Sbjct: 67 IYVLTGVPFIRYMVNSFLVSATVTVVALFFHTMAGYALARLRFPGREVMFLSIFSTFLVS 126 Query: 120 PDILIVENYQTMNLLGLRDTILAIGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASP 179 ++IV + + +G+ ++ + +P +AFGIFLLRQ + ++P+E++EAA ++GA Sbjct: 127 LPVIIVPLFVIVKAMGMLNSYAGLIIPAIFNAFGIFLLRQYYLSLPKEIEEAARIDGAGY 186 Query: 180 WQILMQVYVPLAKPIYIAFGLVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGV 239 W+I V +PL++PI A ++ +WN+FLWPL +T+ + + +G+ F S Sbjct: 187 WRIYWSVILPLSRPIMSALAILFFLANWNSFLWPLTITSDPDLWVVQLGIANFKS-QYSA 245 Query: 240 DWSIITAATLMTSAPLLLAFLLFQRQFVQSFMRAGIR 276 W+ + AA+ + + P L+ F++FQRQ + S +G++ Sbjct: 246 SWNYMMAASTIVAIPTLILFVIFQRQIMDSLKTSGLK 282 >BH1078 [G] COG0395 ABC-type sugar transport system, permease component Bha Bacillus halodurans Length = 270 Score = 159 bits (401), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 142/254 (55%), Gaps = 1/254 (0%) Query: 24 ALLWLLPLLYALWTAFHPAAYA-TRLVLDAPLTLQNFANAWQAAPFPRYFLNTFLLVTMI 82 ALL P++YA + +F A +R + + + N+ + P Y N+F++ + Sbjct: 17 ALLIFFPIVYAFFVSFMSGAEVLSRAFFPSSVNVDNYEKVFSTVPLLHYLQNSFIVSITV 76 Query: 83 LAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTILA 142 + QL++ +L+AY FA F+G +F+L + LM+ + ++ N+ T+ LG ++ L Sbjct: 77 MIGQLIVCSLSAYVFAFIPFKGRTFVFLLFISTLMIPWEAAMIPNFLTIQKLGWLNSYLG 136 Query: 143 IGLPYFASAFGIFLLRQTFKTVPRELDEAATVEGASPWQILMQVYVPLAKPIYIAFGLVS 202 + +P+FA AFG FLLRQ FKT+P+EL EAA VEG SP+Q +V +P AK + G+ Sbjct: 137 MTVPFFALAFGTFLLRQHFKTIPKELHEAAQVEGLSPFQFFYKVCLPYAKTSLVTLGIYG 196 Query: 203 VSTHWNNFLWPLIVTNSVESRPLTVGLQVFSSTDQGVDWSIITAATLMTSAPLLLAFLLF 262 T WN +LWPL+VT + R + +GL+ + + +W ++ A ++ P LL L Sbjct: 197 FLTTWNMYLWPLLVTTNDRKRTVQIGLKQLQTVEVATEWGVVMAGVVVVIIPTLLLLFLG 256 Query: 263 QRQFVQSFMRAGIR 276 Q+Q + + I+ Sbjct: 257 QKQLQKGLTQGAIK 270 >Rv2317 [G] COG0395 ABC-type sugar transport system, permease component Mtu Mycobacterium tuberculosis H37Rv Length = 274 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/259 (38%), Positives = 151/259 (58%), Gaps = 10/259 (3%) Query: 24 ALLWLLPLLYALWTAF---HPAAYATRLVLDAPLTLQNFANAWQAAPFPRYFLNTFLLVT 80 A++ L P L L T+F H A T L L P TL N+A+ A F R + T L+ Sbjct: 20 AVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAG-FRRAAVVTALMTA 78 Query: 81 MILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTI 140 +IL QL + LAAYAFAR FRG + +F + + LMV + +V Y M LGLR+T Sbjct: 79 VILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPLYLMMAQLGLRNTF 138 Query: 141 LAIGLPY-FASAFGIFLLRQTFKTVPRELDEAATVEGASPWQILMQVYVPLAKPIYIAFG 199 A+ LP+ F S + IFLLR+ F+ +P +L AA ++GA+ +++ V +P ++P+ A Sbjct: 139 WALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVHVVIPSSRPVLAALA 198 Query: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSS--TDQGVDWSIITAATLMTSAPLLL 257 +++V + WNNF+WPL++T+ + R LTV S DQ W+++ AAT + PL+ Sbjct: 199 MITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQ---WTLVMAATTVAIVPLIA 255 Query: 258 AFLLFQRQFVQSFMRAGIR 276 F+ FQR V S + +G++ Sbjct: 256 LFVTFQRHIVASIVVSGLK 274