BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3037.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 232 8e-61 AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 216 7e-56 AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 214 1e-55 BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella meli... 212 1e-54 SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 207 2e-53 >PA3711 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 301 Score = 232 bits (592), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 129/299 (43%), Positives = 188/299 (62%), Gaps = 4/299 (1%) Query: 1 MLDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTA 60 M DW++LR FLEL RS L+ AAK+LG H+TV+R ++ E +G+QLF ++ GY+LT Sbjct: 1 MFDWNDLRFFLELQRSGRLLTAAKRLGTTHATVARHIENIERDLGTQLFAQHTGGYQLTP 60 Query: 61 DGYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPH 120 G L+ +AE +E+T A EE+ S L GQ+R+G TEG G+ LAP LA P Sbjct: 61 AGQALLKHAEAMENTALLAQEEMSQSISPL-GQIRIGVTEGLGSVFLAPRLAQLMRHYPG 119 Query: 121 ITVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKL-SDYVLKLYASRDYLARHAPIH 179 + V+++ +PRFV+++ EADI++S++RP S + V+T+L + Y L L+AS YL + P+ Sbjct: 120 LEVELVSVPRFVSITNREADIAISLDRP-SADLVITRLLTRYRLALFASPAYLEQAPPLR 178 Query: 180 STADLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPC 239 DL +H +IGY+DDL+FS+EL + + FRSTSVVAQ AA AG LAILP Sbjct: 179 DRDDLGRHQWIGYVDDLLFSQELMFHHSFCRHPQVVFRSTSVVAQQQAAQAGIGLAILPH 238 Query: 240 FLAQQSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLMGQS 298 F+ + LVPVL +E +I R +W+ E R+ +W +L E + R+ L+G S Sbjct: 239 FMGSRDPLLVPVLPEE-SIQREYWMSTRRELHRSVRLRVVWDFLLELCQREREVLLGPS 296 >AGc354 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 293 Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 175/294 (59%), Gaps = 1/294 (0%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 ++WD++RIFL + RS ++ A+K+LG++H+T+SRR+ E+ + +QLF R +G ++T + Sbjct: 1 MNWDDVRIFLAVARSGQILAASKRLGLNHATLSRRLTLLEQALKTQLFIRRTNGCEMTEE 60 Query: 62 GYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHI 121 G R + AE++E+ + A LG ++ ++G VR+GA +G G LAP L AR P + Sbjct: 61 GQRFLGAAERMETEMLNAQANLGRVDTAVAGTVRIGAPDGLGVSFLAPRLGRLTARYPDL 120 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHST 181 + ++P+PR +LS+ EADI+++IERP G + +KL+DY L LYAS DYLA H Sbjct: 121 KIQLVPVPRSFSLSQREADIAITIERPEQGRLMFSKLTDYSLGLYASADYLADHGTPDDV 180 Query: 182 ADLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 241 L +H IGY++DL+FS L Y + D AF +S Q A +G + IL ++ Sbjct: 181 EALKRHRRIGYVEDLIFSPSLNYTGEIMRDWDAAFEISSATGQTEAVRSGAGIGILHNYI 240 Query: 242 AQQSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRECVELNRDFLM 295 A Q +L+ ++ + I+RS+W R + RV + +L+E V R + Sbjct: 241 AGQYPELMRIMPH-LGISRSYWTAYHESARQLVRVRTVVDFLQELVAEERRIFI 293 >AGl1464 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 305 Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 112/280 (40%), Positives = 164/280 (58%) Query: 4 WDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTADGY 63 WD+L+ FL + R+ L AA+ L H+TVSR + R E + ++LF+RN GY+LT G Sbjct: 7 WDDLQYFLAVARTGQLSSAARSLRTSHATVSRHIDRLEFSLKTKLFERNPRGYELTTVGR 66 Query: 64 RLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHITV 123 RLVD E++E+ ++ S L G VRL A EGF F L F A +PHI V Sbjct: 67 RLVDTVERIEAEAERLQSDISESGSLLRGVVRLSAPEGFSNFFFVERLKDFAATHPHIMV 126 Query: 124 DMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHSTAD 183 +M+ + + + LS+ EAD++V+++ P +G Y+ ++ DY L +YASR YLA H I D Sbjct: 127 EMVTIQQIMALSRKEADVAVTLDPPKAGPYINEQIIDYTLHIYASRSYLAGHPKITRRED 186 Query: 184 LAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFLAQ 243 L H FIGY+ DL+FS L Y V P F+S+S+ AQ TA +GR L ILP F+A Sbjct: 187 LPNHFFIGYVQDLIFSPGLDYMRDVWPGLRPNFQSSSIFAQLTATLSGRGLCILPNFIAA 246 Query: 244 QSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYL 283 + L VL ++ + R +WL + + +V RV +L ++ Sbjct: 247 RFPDLQMVLPGDVELRRGYWLTSHQDFANVPRVRSLMDFI 286 >BMEI0218 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 308 Score = 212 bits (539), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/287 (37%), Positives = 171/287 (59%), Gaps = 1/287 (0%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 ++WD++RIFL + RS ++ AA++LG++H+TV+RR+ E + + L R +G LT Sbjct: 16 MNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHA 75 Query: 62 GYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHI 121 G + AE++E+ + +A ++G + +SG VR+GA +GFG LAP LA + P + Sbjct: 76 GEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDL 135 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHST 181 T+ ++P+PR +LS+ EADI++++ERP G V +L DY L LYA R YL ++ S Sbjct: 136 TIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSP 195 Query: 182 ADLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 241 DL +H IGY++DLV + L Y ++ D AF +S + Q A AG + IL F+ Sbjct: 196 EDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVEAVRAGAGIGILHSFI 255 Query: 242 AQQSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRECVE 288 A LVPVL + I R++WL R + RV+A+ + + E VE Sbjct: 256 ACADPDLVPVLPDRV-IHRAYWLAYHESARTLRRVTAVSALISELVE 301 >SMc00780 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 293 Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 104/286 (36%), Positives = 175/286 (61%), Gaps = 1/286 (0%) Query: 2 LDWDNLRIFLELTRSQGLVDAAKKLGIDHSTVSRRMKRFEEQVGSQLFDRNNHGYKLTAD 61 ++WD++R+FL + R+ ++ A+K+LGI+H+T+SRR+ EE++ ++L R +G +LTA+ Sbjct: 1 MNWDDVRVFLAVARTGQILAASKRLGINHATLSRRVTALEEELKAKLLIRRPNGCELTAE 60 Query: 62 GYRLVDYAEQVESTLYAATEELGGHNSKLSGQVRLGATEGFGTFVLAPHLAHFCARNPHI 121 G AE++E+ + AA ++G ++ ++G VR+GA +GFG LAP L AR P + Sbjct: 61 GEVFFAAAERMETEMLAAQSQVGRIDTAIAGTVRIGAPDGFGVSFLAPRLGRLTARYPEL 120 Query: 122 TVDMLPMPRFVNLSKHEADISVSIERPLSGNYVVTKLSDYVLKLYASRDYLARHAPIHST 181 + ++P+PR +LS+ EADI+++IERP G V +KL+DY L LYAS +YL R+ + Sbjct: 121 KLQLVPVPRSFSLSQREADIAITIERPEQGRLVSSKLTDYTLGLYASAEYLGRYGTPGTV 180 Query: 182 ADLAQHHFIGYIDDLVFSEELRYKDTVAPDAFRAFRSTSVVAQYTAACAGRALAILPCFL 241 DL H IGY++DL+F+ L + V +F +S + Q A + + IL ++ Sbjct: 181 DDLKNHRRIGYVEDLIFTPSLNFSTEVMRSWDASFEISSAMGQTEAVRSSAGIGILHNYI 240 Query: 242 AQQSEQLVPVLAQEIAITRSFWLVASSEQRHVARVSALWSYLRECV 287 A+Q +LV +L I R++W R + RV + ++L+E V Sbjct: 241 ARQYPELVRLLPDR-TIRRAYWTTYHESARDLVRVRTVAAFLQEMV 285