BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3032.p (277 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 130 3e-30 SMb21350 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 129 5e-30 BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella me... 124 2e-28 AGl2736 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 119 5e-27 SMc04143 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 118 1e-26 >AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 138/243 (56%), Gaps = 12/243 (4%) Query: 15 ALASMAAAARGKTTLADHVTSVLAQQIRSGEFAPDARLPSEMELTERFAVSRTVIREAIS 74 A S AA +G+T L V+ L QI G + RLPSE ++T+ F VSRTV+REA++ Sbjct: 4 ATTSEPAAPQGRT-LVVKVSEELRSQIAKGRYKTGDRLPSEAQMTQEFGVSRTVVREAVA 62 Query: 75 RLKSEGLVGSRRGSGTVVLPVSPAT--PFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMA 132 L+S+GLV R+G+G VL +P PF VD R + +++ ++ELR VEG+ A Sbjct: 63 SLRSDGLVEPRQGAGVFVLEPAPVERRPFH---NVDLAR--VSSLIEMLELRTAVEGDAA 117 Query: 133 ALAAQRRTRAQNLAIQQALRDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLS 192 LAA RR+ AQ I +A A+AA G + DFAFH A++ A++NP ++ +Q L Sbjct: 118 GLAAIRRSPAQEEKIIEAFDAFRASAARGMPTAEADFAFHIAVAEATNNPRFSEFLQVLG 177 Query: 193 QFLHAAIRVARMNEAR---SSEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQR 249 + VA N A S + ++ EH A+ AI +GN +AAR+A H++ S R Sbjct: 178 PTVIPRRAVAE-NGAETVLSPADLSRLVGEHEAILIAIQDGNEDAARSAMRSHLKSSQTR 236 Query: 250 IQA 252 +A Sbjct: 237 YRA 239 >SMb21350 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 249 Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 137/242 (56%), Gaps = 8/242 (3%) Query: 26 KTTLADHVTSVLAQQIRSGEFAPDARLPSEMELTERFAVSRTVIREAISRLKSEGLVGSR 85 K L++ V + + +Q+ GE P +LP+E ++E F VSRTV+REAI+ L ++GLV R Sbjct: 8 KPKLSERVANAIREQVLKGEIQPGQKLPTESRMSEFFGVSRTVVREAIATLAADGLVEPR 67 Query: 86 RGSGTVVLPVSPATPFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRRTRAQNL 145 +G+G V+ P F + +D G + I L VIE+R G+E E A LAA RR AQ Sbjct: 68 QGAGVFVMD-HPTLAFG-SISLDVG-NKISHALNVIEVRMGLEIESAGLAALRRNSAQEA 124 Query: 146 AIQQALRDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLS-QFLHAAIRVARM 204 IQ+A + D G + DFAFH AI+ A++NP Y ++ L + + + Sbjct: 125 QIQEAFFEFDRLLERGEATGKSDFAFHRAIAAATNNPYYVEVLDALGLRAIPCDVASPWG 184 Query: 205 NEA-RSSEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRIQ---AADKAFWAS 260 E+ S E+ + ++ EH A+ +AISE + EAARAA H+ S +R + + +A W + Sbjct: 185 TESVLSREYQESLQREHLAILKAISESDPEAARAAMRAHLAASQERYRVRLSGQQAAWGA 244 Query: 261 AE 262 A+ Sbjct: 245 AK 246 >BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella melitensis Length = 270 Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 135/234 (57%), Gaps = 8/234 (3%) Query: 21 AAARGKTTLADHVTSVLAQQIRSGEFAPDARLPSEMELTERFAVSRTVIREAISRLKSEG 80 AA R L + + + ++I GEF+ ++LPSE EL+ + VSR V+REA+S+LK +G Sbjct: 32 AAGRATGHLPEEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDG 91 Query: 81 LVGSRRGSGTVVLPVSPATPFRLD-LKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRR 139 LV +R GSG V+ S FR+ L V+E Q++ +++EL +E +AA R Sbjct: 92 LVEARAGSGVFVIDESNQKAFRIQPLVVEEA----QSLEQLMELLVAIEVAATRIAAVNR 147 Query: 140 TRAQNLAIQQALRDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAI 199 T I++AL ++ A + + G +ED+AFH AI A+HNP + +L + L I Sbjct: 148 TPEDLKQIKRALIGLEYAIISDKLGDEEDYAFHDAIVIATHNPHFIALCKHLEYGARHVI 207 Query: 200 RVARMNEARSS--EFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRIQ 251 R AR N RS+ + + V+ EH A+ +AI G+ E A AA RH+ ++ QR++ Sbjct: 208 RQARTN-TRSNLKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRMK 260 >AGl2736 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 242 Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 8/229 (3%) Query: 26 KTTLADHVTSVLAQQIRSGEFAPDARLPSEMELTERFAVSRTVIREAISRLKSEGLVGSR 85 + +LA ++S L + + G F P RLPSE ELT ++VSRTV+REAI+ L+++GLV +R Sbjct: 9 QVSLAAKISSALRRDLAEGVFRPGDRLPSESELTREYSVSRTVVREAIAILRADGLVEAR 68 Query: 86 RGSGTVVLPVSPA--TPFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRRTRAQ 143 +G+G + PA PF DL V GR I +V+ ++ELR E E A LAA RR+ Q Sbjct: 69 KGAGVFAIEAKPAKEVPFN-DLAV--GR--ISSVIELLELRTVFEVESAGLAASRRSAVQ 123 Query: 144 NLAIQQALRDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFL-SQFLHAAIRVA 202 AI A R + AG DF FH AI+ A+ N + +Q + S + Sbjct: 124 VEAIVDAHRRVGDCLGAGLPTRDADFEFHLAIAQATQNRRFPEFLQLIRSGIIPRGELQG 183 Query: 203 RMNEARSSEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRIQ 251 +R ++ ++ EHA + AI EG+A+AAR H+ S +R + Sbjct: 184 AAPGSRPKDYNLHLQEEHAKIVDAIIEGDADAARQYMAAHLRGSLERYK 232 >SMc04143 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 240 Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 10/225 (4%) Query: 29 LADHVTSVLAQQIRSGEFAPDARLPSEMELTERFAVSRTVIREAISRLKSEGLVGSRRGS 88 LAD + + +QI SG+ A A+LPSE + F VSR V+REA+ RL+++GLV SR+G Sbjct: 16 LADVLYGQILEQIASGQMAEGAKLPSEAHICRDFQVSRPVVREALMRLQADGLVVSRQGI 75 Query: 89 GTVVL--PVSPATPFRLDLKVDEGRDSIQAVLRVIELRRGVEGEMAALAAQRRTRAQNLA 146 GT V P T I + LR E R +E E A LAA RRT+AQ Sbjct: 76 GTFVKSRPSDKLTSL-------AASAEIASYLRAFEPRLALETECAGLAAMRRTKAQLNQ 128 Query: 147 IQQALRDIDAAAAAGRDGVQEDFAFHAAISNASHNPLYTSLVQFLSQFLHAAIRVAR-MN 205 I +AL ++ A A G G +EDFAFH A++ A+ N L+ L++ L L ++R+A + Sbjct: 129 IGEALAALEGAFARGETGWEEDFAFHHAVAEAAGNELFPRLLEELRDILSGSMRMALGLT 188 Query: 206 EARSSEFVQQVRAEHAAMAQAISEGNAEAARAAALRHMEHSAQRI 250 S + ++V EH + AIS N + AR H+ S RI Sbjct: 189 RQGSDDRRRRVLEEHRKIYSAISGQNRDLARLYMRYHLTESRARI 233