BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3031.p (191 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1069 [J] COG0231 Translation elongation factor P (EF-P)/trans... 224 1e-58 NMA1133 [J] COG0231 Translation elongation factor P (EF-P)/trans... 204 1e-52 NMB0937 [J] COG0231 Translation elongation factor P (EF-P)/trans... 203 2e-52 PA2851 [J] COG0231 Translation elongation factor P (EF-P)/transl... 199 3e-51 FN0720 [J] COG0231 Translation elongation factor P (EF-P)/transl... 157 1e-38 >RSc1069 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Rso Ralstonia solanacearum Length = 188 Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 107/187 (57%), Positives = 140/187 (74%), Gaps = 6/187 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPQESVFRGDDKF 60 +K A+E+R GN+ M+ + PM+VL+++ + S R K K KNLLT +P ESVF+ DDK Sbjct: 3 LKIAQELRAGNVFMIGNDPMVVLKTEYSRSGRNAAVVKMKYKNLLTGAPSESVFKADDKM 62 Query: 61 DVVVLDKKPVTYSYFADPLFVFMDEEYNQYEIEGENMGDAIGYLKDGMQCEAVFYDGKAI 120 D ++LDKK TYSYFADP++VFMD +YNQYE+E ++MGDAI YL+DGM E FY+ KAI Sbjct: 63 DQIILDKKECTYSYFADPMYVFMDTDYNQYEVEADSMGDAIHYLEDGMAAEVTFYNEKAI 122 Query: 121 SVEMPTTIVRKVAYSEPAVKGNT-SGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEID 179 SVE+PTT+VR++ Y+EPAVKG+T SG VLK AKI+ E + VPLF S D IEID Sbjct: 123 SVELPTTLVREIEYTEPAVKGDTSSGKVLKMAKIKGGFE-----IQVPLFCSTGDKIEID 177 Query: 180 TRTNEYK 186 TRT+EY+ Sbjct: 178 TRTHEYR 184 >NMA1133 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) NmA Neisseria meningitidis Z2491 Length = 186 Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 98/189 (51%), Positives = 137/189 (72%), Gaps = 7/189 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPQESVFRGDDKF 60 MK A+E+R GN+ MV + PM+V +++ R+ K+KNLLT + E++++ DDKF Sbjct: 1 MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNLLTGAASETIYKADDKF 60 Query: 61 DVVVLDKKPVTYSYFADPLFVFMDEEYNQYEIEGENMGDAIGYLKDGM--QCEAVFYDGK 118 DVV+L +K TYSYFADP++VFMDEE+NQYEIE +N+GDA+ ++ DGM QCE FY+G Sbjct: 61 DVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALKFIVDGMEDQCEVTFYEGN 120 Query: 119 AISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEI 178 ISVE+PT IVR+V Y+EPAVKG+TSG V+K A++ + +I VM ++ D IEI Sbjct: 121 PISVELPTIIVREVEYTEPAVKGDTSGKVMKTARL---VGGTEIQVMS--YIENGDKIEI 175 Query: 179 DTRTNEYKK 187 DTRT E++K Sbjct: 176 DTRTGEFRK 184 >NMB0937 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Nme Neisseria meningitidis MC58 Length = 186 Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 97/189 (51%), Positives = 137/189 (72%), Gaps = 7/189 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPQESVFRGDDKF 60 MK A+E+R GN+ MV + PM+V +++ R+ K+KNLLT + E++++ DDKF Sbjct: 1 MKTAQELRAGNVFMVGNDPMVVQKTEYIKGGRSSAKVSMKLKNLLTGAASETIYKADDKF 60 Query: 61 DVVVLDKKPVTYSYFADPLFVFMDEEYNQYEIEGENMGDAIGYLKDGM--QCEAVFYDGK 118 DVV+L +K TYSYFADP++VFMDEE+NQYEIE +N+GDA+ ++ DGM QCE FY+G Sbjct: 61 DVVILSRKNCTYSYFADPMYVFMDEEFNQYEIEADNIGDALKFIVDGMEDQCEVTFYEGN 120 Query: 119 AISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEI 178 ISVE+PT IVR+V Y+EPAVKG+TSG V+K A++ + +I VM ++ D +EI Sbjct: 121 PISVELPTIIVREVEYTEPAVKGDTSGKVMKTARL---VGGTEIQVMS--YIENGDKVEI 175 Query: 179 DTRTNEYKK 187 DTRT E++K Sbjct: 176 DTRTGEFRK 184 >PA2851 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Pae Pseudomonas aeruginosa Length = 188 Score = 199 bits (506), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 96/193 (49%), Positives = 134/193 (69%), Gaps = 7/193 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPQESVFRGDDKF 60 MK A+E R G + ++ P ++ +++ N S R K K+KNLLT + E+VF+ DDK Sbjct: 1 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGAGTETVFKADDKL 60 Query: 61 DVVVLDKKPVTYSYFADPLFVFMDEEYNQYEIEGENMGDAIGYLKDGMQ--CEAVFYDGK 118 + ++LD+K VTYSYFADPL+VFMD E+NQYEIE +++ + +++DGM CEAVFY+ K Sbjct: 61 EPIILDRKEVTYSYFADPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDK 120 Query: 119 AISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEI 178 ISVE+PTTIVR++AY+EPAV+G+TSG V+K A++ N E + V F D IEI Sbjct: 121 VISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAE-----LQVSAFCEIGDSIEI 175 Query: 179 DTRTNEYKKVVRG 191 DTRT EYK V+ Sbjct: 176 DTRTGEYKSRVKA 188 >FN0720 [J] COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) Fnu Fusobacterium nucleatum Length = 187 Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 79/191 (41%), Positives = 127/191 (66%), Gaps = 6/191 (3%) Query: 1 MKFAKEIRVGNIIMVDSKPMIVLRSDVNGSSRTGFTYKWKMKNLLTNSPQESVFRGDDKF 60 MK A+E+R G+ I + + P +VL+++ N S R K+KMKNL++ + ++V++ DDK Sbjct: 1 MKIAQELRAGSTIKIGNDPFVVLKAEYNKSGRNAAVVKFKMKNLISGNISDAVYKADDKM 60 Query: 61 DVVVLDKKPVTYSYFADPLFVFMD-EEYNQYEIEGENMGDAIGYLKDGMQCEAVFYDGKA 119 D + LDK YSY ++F + E + + E++GE++GDA+ YL++ M + V+Y+ A Sbjct: 61 DDIKLDKVKAIYSYQNGDSYIFSNPETWEEIELKGEDLGDALNYLEEEMPLDVVYYESTA 120 Query: 120 ISVEMPTTIVRKVAYSEPAVKGNTSGNVLKEAKIENAIEANQITVMVPLFVSQDDDIEID 179 ++VE+PT + R+V Y+EP ++G+TSG V+K A+I E V VPLFV Q + I+ID Sbjct: 121 VAVELPTFVEREVTYTEPGLRGDTSGKVMKPARINTGFE-----VQVPLFVEQGEWIKID 175 Query: 180 TRTNEYKKVVR 190 TRTNEY + V+ Sbjct: 176 TRTNEYVERVK 186