BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3029.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella me...   157   7e-39
RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia sol...   144   7e-35
SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobiu...   140   1e-33
CC0915 Non COG                                                        139   2e-33
PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...   139   2e-33

>BMEII0408 [K] COG1846 Transcriptional regulators Bme Brucella melitensis
          Length = 157

 Score =  157 bits (398), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 106/140 (75%), Gaps = 6/140 (4%)

Query: 15  DEALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRL 74
           D  L L + LCFA+YS + A+++AY+ ILAPL++TYPQ+LVMLVLWERDD TVSE+G+RL
Sbjct: 13  DTNLDLADMLCFAVYSTANALSRAYQPILAPLDLTYPQFLVMLVLWERDDCTVSEIGARL 72

Query: 75  FLDSGTLTPLLKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQARTVPQQMSCMLPA 134
            LDSGTLTPLLKR+E+ G + R+RD  DER+V ++L+D GR LR+QA +VP+Q+ C    
Sbjct: 73  NLDSGTLTPLLKRLEAAGRITRRRDPRDERQVRITLTDEGRKLREQAESVPEQIMCA--- 129

Query: 135 LEQVRQLVGELKQVRKGLLE 154
                Q V EL+ +R  L++
Sbjct: 130 ---TGQPVSELQDLRNRLMK 146


>RSp1106 [K] COG1846 Transcriptional regulators Rso Ralstonia solanacearum
          Length = 153

 Score =  144 bits (363), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 73/131 (55%), Positives = 95/131 (72%), Gaps = 5/131 (3%)

Query: 18  LLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRLFLD 77
           L LD QLCFA+YS  + + K Y+ +L PL +TYPQYLVMLVLWERD +TVSE+G RLFLD
Sbjct: 13  LALDQQLCFALYSTMIGLNKVYRGLLKPLGLTYPQYLVMLVLWERDALTVSEIGERLFLD 72

Query: 78  SGTLTPLLKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQARTVP----QQMSCMLP 133
           S TLTP+LKR+E+ GL+ R+R   DER+V+VSL+  G+ L+ +A+ VP      M C+  
Sbjct: 73  SPTLTPMLKRLEAAGLIGRQRSDADERQVIVSLTAEGQRLKHRAKDVPGCVAAAMECVPA 132

Query: 134 ALEQVR-QLVG 143
            LE +R QL G
Sbjct: 133 ELEALRTQLTG 143


>SMc01945 [K] COG1846 Transcriptional regulators Sme Sinorhizobium meliloti
          Length = 138

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 97/137 (70%), Gaps = 5/137 (3%)

Query: 20  LDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRLFLDSG 79
           LDN LCFA+YSA+ A T+ YK +L  L++TYPQYLVM+ LWE+DD TV  LG +LFL+S 
Sbjct: 3   LDNFLCFAIYSANHAFTRVYKPLLDELDLTYPQYLVMVALWEKDDQTVGSLGEKLFLESS 62

Query: 80  TLTPLLKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQARTVP---QQMSCMLPALE 136
           TLTP+LKR+E+MG + R RD  DER+V V L++ GRALR++A  VP      + M PA  
Sbjct: 63  TLTPMLKRLEAMGYILRTRDKADERQVRVRLTETGRALREKASRVPIGIADATGMEPA-- 120

Query: 137 QVRQLVGELKQVRKGLL 153
           +V +L  E+  +R  LL
Sbjct: 121 EVARLKREIAALRASLL 137


>CC0915 Non COG
          Length = 148

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/117 (59%), Positives = 86/117 (73%)

Query: 16  EALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRLF 75
           E L LDNQLCFA+Y A+  MT+ Y+ +L  L +TYPQYL MLVLWE    TV  LG  L 
Sbjct: 13  EILRLDNQLCFALYGAANRMTRLYRPLLDALGLTYPQYLAMLVLWEASPRTVGALGEALD 72

Query: 76  LDSGTLTPLLKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQARTVPQQMSCML 132
           LDS TLTPLLKR+E+ GL+ R RD  DERRV+V+L+D GRALR QA T+P+++ C L
Sbjct: 73  LDSSTLTPLLKRLEAGGLVTRDRDPEDERRVIVALTDKGRALRDQAVTIPEKVFCAL 129


>PA2849 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 151

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 98/141 (69%), Gaps = 7/141 (4%)

Query: 16  EALLLDNQLCFAMYSASLAMTKAYKKILAPLEITYPQYLVMLVLWERDDVTVSELGSRLF 75
           E L LDNQLCFA+YS SL MTK YK +L  L +TYPQY+ MLVLWERD +TV E+ +R+ 
Sbjct: 10  EQLKLDNQLCFALYSTSLQMTKVYKPLLQALGLTYPQYIAMLVLWERDGLTVGEISARML 69

Query: 76  LDSGTLTPLLKRMESMGLLHRKRDAGDERRVVVSLSDAGRALRQQARTVPQQMSCMLPA- 134
            D G+LTPLLKR+E  GL+ R R + DER V++ L+D GRAL++QA ++P   +C+L + 
Sbjct: 70  TDPGSLTPLLKRLEGEGLITRTRSSEDERVVLLRLTDKGRALQRQAESIP---ACILEST 126

Query: 135 ---LEQVRQLVGELKQVRKGL 152
              L Q+  L  EL  +R  L
Sbjct: 127 GLDLPQLVALKDELLALRGNL 147